| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1978 |
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| Symbol | |
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| ID | 3967221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2487442 |
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| End bp | 2489847 |
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| Gene Length | 2406 bp |
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| Protein Length | 801 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637921066 |
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| Product | outer membrane protein |
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| Protein accession | YP_527450 |
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| Protein GI | 90021623 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.103542 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTACC TATACCTGAC AGTAGCTGCA ATGGTTGCGT CGATAAACGC CCACGCGTTA
CAGGGCAAAG TTGTTGATAG CAAAGGCAAC CCCGTTACTA ACGCCACCAT TCAAGTGGTG
GGTTCAAGTG AAACTTTTGC GGTAAACAAG CTTGGTGAAT TTTCGATAGA GGAAACACAT
GCGTACGAGA TTCATATTGT AGCGCCAGGG TTTAGCCATA AGGTTATCCG TATTGGAGAC
ACCTTAAACA CTGAACCTAT GCAAATACCA TTAACCCGAT CTGTTATCGA ACAAGTGGAT
GTAATTGGGC TACCTATTCA CGCTTCTGTC ATTGAATCTG CCCAGCCTAT ATCGGTGTTG
AGTGGCAACG AACTACGTAA CCGCCAAGCT GCAACCTTAG GTGATTCACT CGAGGGGGAG
GTGGGCGTGC ATACTAATTT TCACGGTAAT GTTGCCAGCA CCCCAATTAT TAGAGGACTA
AGCGGGCCGC GCGTACAAAT AACCCAAAAC AGCATGGATG TGAGTGATGT GTCGCGCGTT
GGGCCAGATC ACGCCGTGAC TTCTGAAGTA TCTACCGCTA AACAAGTAGA AATATTGCGA
GGGCCAGCCA CGTTATTTTT TGGCAGCGGT GCTATTGGAG GTGTTGTTAA CGTTGTAGAT
ACTCGCGTAC CCAAAGATTC CACTACATAC GGCGAGTGGT TTATTTCGCA TGAAACGGTA
AACAAACAAA AGCTAGGGGC CGTAAACATT AATACTGGGC TTGATGCTAT TGCCCTACAT
TTTGACGGCT TTTGGCGCGA ATCGAGTGAC TACCAAGTAC CGGTAAACCC AGAAACAAAT
ACGGACGATC AATCAGCGGA TAGCCAGCAA ACTACTCACT CGAATAATTA TTTTGTGAAC
AATAGTAGTG AAGAATCACA TGGTTTCACT CTGGGCGGCA GTTACCTACT TGATAACGGC
TATGTAGGAG CTTCCTATGG CAAATTGTAT CGTCAGTATG GCATACCGGG GCATAGCCAT
GGTGGCGAGC AACATAACGC CAATGAAGTA AGTGTATTTG CGGAATTAGA TCAAGATCGC
TTTCAACTAA TAAGCGAAAT AGATTTAAAC AGCAAGTGGC TAACCGGCGT AAATAGCCGT
TTGGGGTATA CAAACTATAG TCACGCAGAA ATAGAGGCTG GGTTTACCGG TACTATTTTT
ACCAATAAAA CCGTAGAAGC AAAAGTAGAC CTAATGCACC AGCCCATTCA AGAATGGAAG
GGCGGCTGGG TATTTCATTA TAAGCACAGC GATGTTTCTG CAATCGGCCA AGAAGCATTT
ACCCCGCCAT CTAATACTGC TTCTTACGCG CTAGCCGCAG TGGAAGAAAA GCATATTGGC
AATGTACTGT TACAGCTAGG TATGCGTGTT GAATATGTTT CCTTAATAGC AGATAACGTG
CTGCTACCAG AATTAAACCT GCACAGTCAC AGCGAACAAA ATAATACGCA CAGTGAAGAG
CACGAAGACA CGTTAACTGT TATTCAGGTA TTTGAAACAG ATCAAAGCTT TTCCCCTGTG
AGTATTTCTG CTGGTGCGGT GTGGGATTTT ACCCCTGGCT ATAACCTTGC CATTTCATTG
GCTCATGCAG AACGCGCACC TCACGCATCA GAATTATTCT CTTTTGGCCC GCATATTGGC
ACAGGTAGTT ATGAAATAGG GGCTTTGTTT GAGCTAAATA ATACTAGCAG TGAACCGCAA
TTCGATATAA ATAGAAGCAC AATTCAACTA GAAACGTCGA ACAATATCGA TTTAACTTTT
CGCAAGTATG AGGGCGAGGT AGGTGTAATA CTCAATGCTT TTTATAATCA AGTAGATAAT
TACTACTACC AAACAACTAC GGGGTTATAC GCGCAAAGCG GCCATAATCA TGCACACGGT
GACGATGAAG CGCATGATGT TCACGACGAT GAATTACCGG TTTATTTATT TAAAAGTGCA
GATGCACAGC TGTACGGTTT TGAAGCGCAG AGTATGTGGC AAGTAACACC TCGATTAAAA
ACCACATTGT TCTCTGATTA TGTTCAAGCA AAACTACGAG AAGATTCAAC TTACCTACCG
CGTACGCCAC CGCTGCGTTA CGGCGCTAAG CTAGATTACC AATACGGCCG TATTACAGCC
AATATAAGCT GGTCTCACCT TAATGATCAA ACCCACGTAG CGCCCCTAGA AACTAAAACC
CTTGGCTATG ACTGGCTAGA TGCGAGTGCA AGCTGGAGCT TACCGATTAA AACTGCCGAA
GTGGCACTTT TTATAAAGGC AGAAAATATT ACCGATACCG AAGCGCGCGT GCATACCTCT
TACTTAAAAA ACATTGCTCC CAAACCAAGC AAAAATTTTA GCATTGGTTT GCGCGGCAAC
TTTTAG
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| Protein sequence | MKYLYLTVAA MVASINAHAL QGKVVDSKGN PVTNATIQVV GSSETFAVNK LGEFSIEETH
AYEIHIVAPG FSHKVIRIGD TLNTEPMQIP LTRSVIEQVD VIGLPIHASV IESAQPISVL
SGNELRNRQA ATLGDSLEGE VGVHTNFHGN VASTPIIRGL SGPRVQITQN SMDVSDVSRV
GPDHAVTSEV STAKQVEILR GPATLFFGSG AIGGVVNVVD TRVPKDSTTY GEWFISHETV
NKQKLGAVNI NTGLDAIALH FDGFWRESSD YQVPVNPETN TDDQSADSQQ TTHSNNYFVN
NSSEESHGFT LGGSYLLDNG YVGASYGKLY RQYGIPGHSH GGEQHNANEV SVFAELDQDR
FQLISEIDLN SKWLTGVNSR LGYTNYSHAE IEAGFTGTIF TNKTVEAKVD LMHQPIQEWK
GGWVFHYKHS DVSAIGQEAF TPPSNTASYA LAAVEEKHIG NVLLQLGMRV EYVSLIADNV
LLPELNLHSH SEQNNTHSEE HEDTLTVIQV FETDQSFSPV SISAGAVWDF TPGYNLAISL
AHAERAPHAS ELFSFGPHIG TGSYEIGALF ELNNTSSEPQ FDINRSTIQL ETSNNIDLTF
RKYEGEVGVI LNAFYNQVDN YYYQTTTGLY AQSGHNHAHG DDEAHDVHDD ELPVYLFKSA
DAQLYGFEAQ SMWQVTPRLK TTLFSDYVQA KLREDSTYLP RTPPLRYGAK LDYQYGRITA
NISWSHLNDQ THVAPLETKT LGYDWLDASA SWSLPIKTAE VALFIKAENI TDTEARVHTS
YLKNIAPKPS KNFSIGLRGN F
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