Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1932 |
Symbol | |
ID | 3967019 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2436870 |
End bp | 2438183 |
Gene Length | 1314 bp |
Protein Length | 437 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637921020 |
Product | amino acid transporter |
Protein accession | YP_527404 |
Protein GI | 90021577 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0531] Amino acid transporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.392371 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGCATT CACATTCACC ACATTATCAA AAAAATAGTT TAACCCTGGC TGGTGCCGTT GCCATGGGTA CCGGCGTAAT GATCGGCGCG GGTATATTTG CTTTAACAGG TCAAGTTGCG GAGATGGCTA GAGAGTGGTT TCCACTGGCA TTCTTACTTG CCGCTGTTAT TTCGGGTTTC AGCGCCTATT CCTATGTGAA AATGTCGAGC GCGTACCCGA GTGCGGGCGG GATTGCCATG TTTTTGGAAA AGGCTTATGG AAAAGGCACA ACGACGGCTG TGTGCGCCTT GCTCATGTAC TTTTCAATGG TAATTAATGA AAGTTTGGTC GCAAGAACCT TCGCCACTTA TACCTTGCAA ATATTCGATG CAACTGCTGT TGATTGGCTT GTGCCTGCGT TGGGTTCTGC ATTGCTGCTC TTCGCATTTA TCGTCAATAT TCTAGGCAAT CGGTTTATTC AAACATTCTC GTTTGTGATG GGCTTTATCA AAATTGGTGG TCTGGCGTTG CTCGCTATTG GTGGGCTTTG GGTATCGGGC TTTAATTTCG AAAGCATTTC GGTTAAGCCA GAGGATACGA CCATCAGCGG GTTTTTAGGG GCAATTGCCT TGGGTATCCT GGCATATAAG GGGTTTACCA CCATTACCAA CAGCGGTGGT GAAATTAAAG ACCCGCACAA AAATATTGGG CGAGCCATAA TTCTGTCGAT CTCAATTTGT TTGGTTGTGT ATATGCTGGT CGCCTTCGCG GTGGGCGGAA ACCTGAGCAT CAATGAAATT GTACAGGCGA AGGATTATGT ATTAGCCGAA GCGGCACGCC CGGCCTTTGG CCAGTACGGC GTGTGGATTA CTGTGGGATT CGCCATAGTC GCAACGGTTT CCGGTGTGAT TGCCAGTGTG TTCGCAGTCT CGCGAATGCT TGCCATGCTG ACCGACATGA AACTTGTTCC GCACTCGCAT TTCGGTATGC CTGGCAGCAT CCAGCAACAC ACTCTGGTGT ATACCATCGT AGTGGCGATG TTTTTAACAA TATTTTTTGA CTTAAGTCGA ATCGCGTCTC TGGGAGCTAT TTTTTATATC GTTATGGATA TCGCCATACA TTGGGGCGTT TTGAAAAATT TGAGAAAGGA CGTTAAGGCA AGCCCCACGA TACTTACCTT GGCAATTGGA TTGGATGTGT TGGTGCTAAT TGCATTTATT TGGGTAAAAA TTCAGACCGA CATGCTGGTG ATTTGGGCAT CACTCATTGG ATTTATAGGT ATTTTCCTAG GAGAGTATTT TTTCCTCAAG CACTATCGAA CACAGGATAA ATAA
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Protein sequence | MQHSHSPHYQ KNSLTLAGAV AMGTGVMIGA GIFALTGQVA EMAREWFPLA FLLAAVISGF SAYSYVKMSS AYPSAGGIAM FLEKAYGKGT TTAVCALLMY FSMVINESLV ARTFATYTLQ IFDATAVDWL VPALGSALLL FAFIVNILGN RFIQTFSFVM GFIKIGGLAL LAIGGLWVSG FNFESISVKP EDTTISGFLG AIALGILAYK GFTTITNSGG EIKDPHKNIG RAIILSISIC LVVYMLVAFA VGGNLSINEI VQAKDYVLAE AARPAFGQYG VWITVGFAIV ATVSGVIASV FAVSRMLAML TDMKLVPHSH FGMPGSIQQH TLVYTIVVAM FLTIFFDLSR IASLGAIFYI VMDIAIHWGV LKNLRKDVKA SPTILTLAIG LDVLVLIAFI WVKIQTDMLV IWASLIGFIG IFLGEYFFLK HYRTQDK
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