| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1925 |
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| Symbol | |
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| ID | 3967012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2426940 |
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| End bp | 2428373 |
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| Gene Length | 1434 bp |
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| Protein Length | 477 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921013 |
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| Product | GGDEF family protein |
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| Protein accession | YP_527397 |
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| Protein GI | 90021570 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.153173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATTAC GACGCTGGCA GCGCGAAGCT GTGTCACGCT GCATATCCCG TTTTCGCAAT
GGTCAAAACC ATTTTCTATG CTTGGCGACT CCGGGTGCCG GCAAAACGTA TATGGCGTCT
ACAGTTGCCA AAACGTTGCT TGAAAACGGA GAGGTTGATT TTGTTTTCTG CTTTTCCCCA
TCGCTCAATG TCTCCCTTTC CTTTCAGTCC ACTTTGGAGT CTGTACTTGG GGTTCGTTTA
AACGGACTGC TCGGCGCGAA AGGCAATGTA TTAACGTACC AATCCATGCT CAATCTTGGC
CAATCGTTCT GGTCATTGAT GAAGACACAC CGCACCTTGA TAATCTTTGA TGAAATCCAT
CATTGCTCCG GCGATCATCT CGGCAATGCC AACGCCTGGG GTCAAAAGAT CATTCAACAC
ATTCAAGGTA AGGCAACCTA TAGCCTCGCG TTAACCGGCA CGCCCTGGCG TTCGGATCGG
ATTCCCATCG CTTTGACGTC GTATTGCCGG GAAGGAAAAG TCCATTGTGA CTACAGCTAT
GGTTTGGCAC AAGCTATCAA AGATGGCGTT TGCCGTACGC CCAAAATCAC CGTAATAGAC
AATGAAAAAA TCACTGTACA AAACAATGGG AAAGAAGATG TTTATGGATC CATTGGTGAT
CTATTGAAGT CCTCTCGGTG CACATACCAG CAACTTCTTG AAAACCTCAC ACTCATTCGA
TATTTGGTTG AGCAAAGCCA CAAAGCCCTC AACACGTTAA GACGAGTTCA ACCAAACGCA
GGCGGGCTCA TCGTTGCAGC TTCAGTGGAA CATGCGGTTC TTATCGCCAC AATATTAGAA
AGCATTTGCG GAGAATCTCC CACGGTGGTG ACGTATTTGC ATGACGAGTC TCAACAGGCG
ATTCAACGTT TTCGCGATGG ACAGACCCGG TGGATCGTCT CAGTCGGCAT GATCAGCGAA
GGCACCGATA TTCCTCGTTT ACAGGTCTGT TGTCACCTGA CCCGCGTTAA AACGGAATTG
TATTTTCGAC AAGTACTAGG CAGGATTTTG AGGGTACAAA ATAGTGGCAA CGAAGAAGCG
CTACTCATCA TGCCAGCCGA GCCTAAATTA ATCGAATTTG CACATCGGGT CGCTGAAGAT
ATTCCTGCTG CCAATACCGT ATCACTCAAG ACAATGGAGG GGAGTCTGCA ACCGCTGTTG
ACCGACCAAG TAGAAGCAGA GACCGAATCC GGTACCAATA AGATAGATAC AATTAAATCG
AACGATACTG GTGAAGATCA AGAGTATCAG CCTGGCCTGT TATCGCTGGG GGAACTTGAA
GAAGACAGTA CCGCTCTGCC CTTTACCACT TTAGCGGAAG CCTACGAGAC GACTCTGGGC
CTATTCGGTC GTTTTCGAAA ACGCATGATT AACTTTTCGC CGGTGATTGG ATGA
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| Protein sequence | MKLRRWQREA VSRCISRFRN GQNHFLCLAT PGAGKTYMAS TVAKTLLENG EVDFVFCFSP
SLNVSLSFQS TLESVLGVRL NGLLGAKGNV LTYQSMLNLG QSFWSLMKTH RTLIIFDEIH
HCSGDHLGNA NAWGQKIIQH IQGKATYSLA LTGTPWRSDR IPIALTSYCR EGKVHCDYSY
GLAQAIKDGV CRTPKITVID NEKITVQNNG KEDVYGSIGD LLKSSRCTYQ QLLENLTLIR
YLVEQSHKAL NTLRRVQPNA GGLIVAASVE HAVLIATILE SICGESPTVV TYLHDESQQA
IQRFRDGQTR WIVSVGMISE GTDIPRLQVC CHLTRVKTEL YFRQVLGRIL RVQNSGNEEA
LLIMPAEPKL IEFAHRVAED IPAANTVSLK TMEGSLQPLL TDQVEAETES GTNKIDTIKS
NDTGEDQEYQ PGLLSLGELE EDSTALPFTT LAEAYETTLG LFGRFRKRMI NFSPVIG
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