| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1906 |
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| Symbol | |
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| ID | 3966970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2407246 |
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| End bp | 2409057 |
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| Gene Length | 1812 bp |
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| Protein Length | 603 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920991 |
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| Product | response regulator receiver domain-containing protein |
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| Protein accession | YP_527378 |
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| Protein GI | 90021551 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTAAAA TACCCACTCG TACCGCGTCT ACTCTATTGC TAGTGGTGCT CGCGATTATA
ATCTCATTTG AAGTACACGC TCAGCCGACA GCAACAGCAA GCAGCCTTCG CACAGAATCT
ATTAAAGTTG ACCTAAACCA AGAATTTGAG TTCCTCGAGC TAGATAACAA TTTCAAGCTG
TACGAAGATG TTTCTGCCAG CGCCACGATA GACGATGTAG CGCAAGTGTT TGAAGATGAA
GCCACCACTC AGTTTTCGGT TGGCGACACC AACATAGGGT ATTCGAGCTC TGCTTGGTGG
GTAAAACTAA GCTTTCACAA CCCGCAGTCG GCACCTAAAG AAATTATTCT ACGACAAGCT
TACCCCCTTA TTGATAACCT TCAACTCTGG ACAAGAAGCT ACGAGAGCCA TTGGAGCGTA
AAGCAATATG GCGATAAATT TCCTTTTAGC CACAGAGAAA TTTACCACCG CGAATTCCTG
TTTCCACTAA TCATCCCCGC AAGGTCCACA AAAGAATACT TTTTACGCTA CGAATCAGAA
GGCTCACTCG ACATAGCGTT AAGCATACAC GAGCCGCAAC ACTTACTTAG TTTTGTGGGC
ACTCAGCAAC TTATTTACGG GTTGTATTAC GGTGGCTTTA TGGTGCTTGT GCTCTATAAC
CTGTTTATTT TTATAGCAGT GCGAGATAAA GCCTTTTTGT ACTACCTTCT ATATATATTC
TTTTACGGGC TCTATATGGG CGCACATAAT GGCCTAACGT TTCAATATTT CTGGCCTAAT
CACCCACAAA TAGGTAACGA GGGCCTGCTT GTTACCCTCT CGCTGTCGCT GGTGTTTGCG
CTGCAATTCT CAACAGATAT TTTAAATATT AAAGAATTTT CTAAGCTGCT TAACCGAATA
GCCAAATGCC TAATGATAGC TTGCGTTGTA GCAATACCCG CCGTACTTAC AATGCCCTAT
GCTTTTATGG CACCTGTTAT GACAGTGCTA ACCCTAACCA TAATGCCGCT ATTTTTTGTT
ATGGGCGTAT TACGATTAGC ATCGGGCTAC CGCCCTGCTC GCTATTTTAT GCTCGCATGG
ACCGCACTCA TCTTTAGCGT AATTGTTTAT GTACTTAAAG TGTTTGGCGT ATTACCAAGA
ACATTCTTTA CCGAAAACGG TTTCCAAATA GGCTCAATTA TTGAAATGGT GTTGCTATCA
CTCGCATTGG GTAGCCGTAT GACAGAACTT AAACAACAAA GCCACACCGA CGCCCTAACA
GAAATAGGTA ATCGACGCCG ATTCGACGAT GTATTCCCAG TTGAATTTGA GCGAGCGCAG
CGCAACAAAC AACCGCTGGC ACTGCTTATG ATAGATATAG ATTACTTCAA AAAGCTTAAT
GACACATTTG GCCACGATGC TGGTGACCAA GCATTGCGTG CAGTAGCTAC AACCATTAAA
ACCCTTACTC GCAAACCAAT GTTACCCTGC CGTTTTGGCG GTGAAGAATT TGCTGTAATT
TTGCCGCGCA CCGATAGCGC GGCTGCAAAA ATAGTCGCAG AACGCATAAG GCAAACCATC
GCCGAAAAAC CTATGGCTAA ACGAGAAGTT ACTGTGAGTG TGGGTGTGGC ATCAACGGAC
ATGGGGTATT TCACATCATC ACGAGCCATT ATGAACGCCG CCGATGAATG CCTTTACCTT
GCGAAAGAAA TGGGTAGAAA TAGAGTGTGT TTGTTTAGCG AGGCACCACA AAAGCAGGCG
CCAATCGCTG CATCTAAAAC ACCGCTGCTG GAAAACACTA CGGAGGGCAA CGAGCCTAAC
GCCGCTGTTT AA
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| Protein sequence | MAKIPTRTAS TLLLVVLAII ISFEVHAQPT ATASSLRTES IKVDLNQEFE FLELDNNFKL
YEDVSASATI DDVAQVFEDE ATTQFSVGDT NIGYSSSAWW VKLSFHNPQS APKEIILRQA
YPLIDNLQLW TRSYESHWSV KQYGDKFPFS HREIYHREFL FPLIIPARST KEYFLRYESE
GSLDIALSIH EPQHLLSFVG TQQLIYGLYY GGFMVLVLYN LFIFIAVRDK AFLYYLLYIF
FYGLYMGAHN GLTFQYFWPN HPQIGNEGLL VTLSLSLVFA LQFSTDILNI KEFSKLLNRI
AKCLMIACVV AIPAVLTMPY AFMAPVMTVL TLTIMPLFFV MGVLRLASGY RPARYFMLAW
TALIFSVIVY VLKVFGVLPR TFFTENGFQI GSIIEMVLLS LALGSRMTEL KQQSHTDALT
EIGNRRRFDD VFPVEFERAQ RNKQPLALLM IDIDYFKKLN DTFGHDAGDQ ALRAVATTIK
TLTRKPMLPC RFGGEEFAVI LPRTDSAAAK IVAERIRQTI AEKPMAKREV TVSVGVASTD
MGYFTSSRAI MNAADECLYL AKEMGRNRVC LFSEAPQKQA PIAASKTPLL ENTTEGNEPN
AAV
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