| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1783 |
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| Symbol | |
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| ID | 3966709 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2274869 |
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| End bp | 2277580 |
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| Gene Length | 2712 bp |
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| Protein Length | 903 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637920866 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_527255 |
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| Protein GI | 90021428 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAAAGT CATTAGTAAT TGTGGAATCG CCGGCCAAGG CTAAAACAAT TAACAAGTAT
CTTGGCAATA AGTTCGTAGT GAAATCCAGC GTAGGCCATA TACGCGATTT ACCTACTAGC
GGTGGAGCTA AGTCTACGGT TGATCCCAAA GAACGCGCTA AGCAAGCTGC GTTGACTAGA
AAGATGTCGC CCGAAGAAAA AGCGATTCAT CGAGAAAAGA AATCACGCGA ACAACTTATA
AACCGTATGG GAATTAACCC AGAAAAAAAC TGGGAAGCCC GTTACGAGAT TCTGCCTGGC
AAAGAAAAAG TTGTAGAAGA ACTAAAAAAA CTGGCTGAAG AAGCCGACAC CATCTACCTC
GCAACGGATT TGGATCGCGA GGGAGAGGCC ATTGCATGGC ACTTGCAAGA AACTATTGGT
GGTGACCCAG ATCGCTACCG CCGAGTTGTG TTTAACGAAA TTACCAAAAC GGCTATCCAA
AAAGCGTTTG AAAAACCCAG CATGCTCGAC CTAAATCGAG TGAATGCACA GCAGGCGCGG
CGCTTTTTAG ATAGGGTTGT GGGTTACATG GTTTCCCCGT TGTTGTGGGA AAAAATTGCA
CGCGGCTTAT CGGCCGGCCG AGTACAGTCT GTTGCTGTTC GATTAGTTGC CGAGCGCGAG
CGAGAAATTC GAGCGTTTAT TCCAGAAGAA TATTGGGACA TAGCCGCGCA GTTGGATACA
CCGAAGGGTG AGCGCGCTGG CTTCGATGTA AAAAAATATC AAGGTAATGT CTTCCGCCCA
GTTAACGAAA AAGAAGCCAT GGAGGCTGTT GAGCGCTTAA AAGCGAGCGC GTTTAAAGTT
ACCTCCCGCG AAGACAAACC CACACAATCT AAACCTACTG CCCCTTTTAT TACTTCTACA
TTACAGCAGG CTGCATCCAC TAGACTTAGT TTTGGTGTAA AAAAGACCAT GATGATGGCG
CAGCGTTTGT ACGAAGCTGG GCATATCACA TACATGCGTA CCGACTCTAC TAACTTAAGT
GCAGAAGCGG TTGAAACCTG TAGAGGGTTT ATTCTAGATA CGTTTGGTGA AAAATATTTA
CCCGAAGCCC CCATTTCATA CTCAAGCAAA GAGGGCGCGC AAGAGGCGCA CGAAGCGATA
CGTCCATCGG ATGTAACGCG TCGCCCAGAT AGCCTGACAG ACATGGAGCG CGATGCTCAG
CGGCTTTATA CGCTAATTTG GAACCAATTT GTTGCGTGCC AGATGACTCC GGCACAATTC
ACCAGCTCGA ACATTGTGGT GACAGCCTCA GATTACGAAT TGCGAGCCAG AGGCCGCGTT
ATTCGTTTCG ATGGCTTTTT ACGGGTAATG CCAGCCATTG CTAAAAAAGA TGAAGATAAA
ATTTTACCCG ACGTAAAAGT GGGTGAAACT CTTAATCTTC ATCAGCTTGA CCCAAGTCAG
CATTTTACCA AGCCAACGGC GCGTTACACC GAAGCCAGCT TGGTAAAAGA GTTAGAAAAG
CAGGGGATAG GTCGTCCATC CACATACGCG GCCATTATTT CTACCATTCA AGATCGCGGT
TACGTACATG TTGAAAACCG TCGGTTCTAT GCCGATAAAA TGGGCGACAT TGTTACCGAG
CGCTTAACGG AAAGCTTTAG CGACCTAATG GATTACAGCT TTACCGCGAA AATGGAAGAG
TCTCTAGACG TAGTGGCCGA AGGTAAAAAA GATTGGCTAT CGCTGCTAAA TAATTTTTAC
GACGACTTCA TGCAGAAGTT GGACGCGGCT AAAGCGGCAG ATACCGGCAT GCGTCGCAAC
GAGCCAGTTG AAACCAATAT TGAATGCACG AATTGCGGCC GCAACATGCA AATCCGCACT
GGTACCACTG GTGTATTTTT GGGTTGCTCT GGCTACAACT TACCGCCCAA AGAACGCTGT
AAGAACACCA TGAACTTGGT GGCTGGCGAA GAAGCGGTAA ACATTGACGA AGATGATGAG
GCAGAATCCA AGCAGCTGCG TCAAAAACGC CGATGCAAAA TTTGTAATAC TGCAATGGAT
AGCTACTTAC TGGATGAAAC CAGAAAGCTG CACATTTGTG GTAATAACCC AGATTGTTCT
GGCTACGAAG TAGAGGCCGG TAGCTTTAAA ATTAAAGGTT ACGAAGGCCC GGTTATTGAA
TGCGATAAGT GCGGCCAAGA CATGCAGTTA AAGTCGGGTC GATTTGGTAA ATACTTTGGC
TGCACAAGCG AAAGCTGCAG CAATACTAGA AAGCTATTGC GTAACGGTGA AGCTGCGCCG
CCCAAAATGG ACCCAGTAAA AATGCCAGAG CTTAAATGCG AGAAGGTAGA CGATACCTAC
GTATTGCGCG ATGGTGCTTC GGGCATTTTC TTGGCTGCGA GTCAGTTTCC TAAAAACAGA
GAAACGCGAG CGCCACTAGT AAAAGAGCTG TTGCCACACA AAGACGAAAT AGACCCCAAG
TACGACTTTT TGATGAAGGC ACCACTGCAG GATAATAACG GCTTGGATAC TATTGTTCGC
TACAGCCGTA AAACCAAAGA GCAGTATGTG CAAACCGAAG TAGACGGTAA GGCCACAGGC
TGGAAAGCGT TTTACGAGGG TGGTAAATGG GTGATTAGCG ATGAGCAAAA ACCTAAAAAA
CCCGCTAAAA AAGCAGCTAC AAAAACGAAA GCTAAGCCGA AAGCAAAAGC CAAGGCTAAA
AAAGACGAAT AG
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| Protein sequence | MEKSLVIVES PAKAKTINKY LGNKFVVKSS VGHIRDLPTS GGAKSTVDPK ERAKQAALTR
KMSPEEKAIH REKKSREQLI NRMGINPEKN WEARYEILPG KEKVVEELKK LAEEADTIYL
ATDLDREGEA IAWHLQETIG GDPDRYRRVV FNEITKTAIQ KAFEKPSMLD LNRVNAQQAR
RFLDRVVGYM VSPLLWEKIA RGLSAGRVQS VAVRLVAERE REIRAFIPEE YWDIAAQLDT
PKGERAGFDV KKYQGNVFRP VNEKEAMEAV ERLKASAFKV TSREDKPTQS KPTAPFITST
LQQAASTRLS FGVKKTMMMA QRLYEAGHIT YMRTDSTNLS AEAVETCRGF ILDTFGEKYL
PEAPISYSSK EGAQEAHEAI RPSDVTRRPD SLTDMERDAQ RLYTLIWNQF VACQMTPAQF
TSSNIVVTAS DYELRARGRV IRFDGFLRVM PAIAKKDEDK ILPDVKVGET LNLHQLDPSQ
HFTKPTARYT EASLVKELEK QGIGRPSTYA AIISTIQDRG YVHVENRRFY ADKMGDIVTE
RLTESFSDLM DYSFTAKMEE SLDVVAEGKK DWLSLLNNFY DDFMQKLDAA KAADTGMRRN
EPVETNIECT NCGRNMQIRT GTTGVFLGCS GYNLPPKERC KNTMNLVAGE EAVNIDEDDE
AESKQLRQKR RCKICNTAMD SYLLDETRKL HICGNNPDCS GYEVEAGSFK IKGYEGPVIE
CDKCGQDMQL KSGRFGKYFG CTSESCSNTR KLLRNGEAAP PKMDPVKMPE LKCEKVDDTY
VLRDGASGIF LAASQFPKNR ETRAPLVKEL LPHKDEIDPK YDFLMKAPLQ DNNGLDTIVR
YSRKTKEQYV QTEVDGKATG WKAFYEGGKW VISDEQKPKK PAKKAATKTK AKPKAKAKAK
KDE
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