Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1587 |
Symbol | |
ID | 3965654 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2039034 |
End bp | 2040689 |
Gene Length | 1656 bp |
Protein Length | 551 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637920668 |
Product | pseudouridine synthase, RluD |
Protein accession | YP_527061 |
Protein GI | 90021234 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.477601 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTAAGA AGCGTCAGGT AATTATTGGG CTTGCGGTAG TGGGAGCTTT GTATGTAGGT TATGCCATTC TTGGCAAGAA TCCACAGCAA GAACAGTTTG ATAAAGTTGG GCTAAGTAAA GATGTTGTAC GGCTCGACCA AAATTGGAGC GAAGATATTC GTCAACAGTT TAACTTTACT ACTTTCGGCT CGAGGCTGAT GCCCTACGAG TGGTTTTTGA ATATAGAAGT GGAAGGTAGT GAGCAAAAAC TACGTAGCGA TGAAGTGCTA GGGCATTTGG GGTTTATTTT GCAAGATACC GCTCGCAATA ACCCAGAAGG TTTGCCTGTA GGTTTTGCGG TAGATGATCG CGAAGAGACT AAATGGGTAG GGCTTACTTG TGCTGCTTGT CACGCGGGTG AAATTACCTA TCAAGACCAA AAAATATATA TTGATGGCGG CCCAGGGTTA ATGGATTTTA CTGGGTTTGA GCAAACTGTG TACGGCGCTT TAAAGTCTAC TTACGAAGAT GCAGCGAAGT TTGATCGATT CGCTGCGGCG CTTAAGCAAA GCTCGCCAGA AGATAAAACC GAATTAAAAG AAACATTAAA ATCGAGAGTT GATTTTTTTC GCTTAAGGTT AGAAGCAAAT GCTACAGAGG TGCCTTATGG TTATGGGCGC GTAGATGCAT TTGGTCAAAT CTTTAATGCT ATTGCGGTTG AAGCAATGGA TATTCCTTCT AACCGCCATG TGCCAGATGG CCCTGTAAGT ATTCCTGTGC TGTGGGACGC ATCGCACTTA GACCTAGTGC AGTGGAATGC ATCTGCAGCA AACAGCGAGC CAGGCCCATT AGGGCAAAAT GCGACAACCG CACTGGCTGT GTATGGCCAA ATAGATATGC CCGGCTCTAA GTGGTTTGGT TATTCTTCCA CCATTGCATT TAGAAATTTG GGATACATTC AAACTAAATT GTATGAGCTC ACATCACCAG TTTGGCCTGA GCAAATATTG GGTGAAATTG ATAAAACCAA AGCAGCCGCA GGCAAAAAGT TGTATGAGCA AAACTGTGCT AGCTGCCATA CCGTAATAGA TAGAGCCGAC CCAACTCGTA AGCTTAAGGC TGGTGCCATT CCGCTAGAGC AAATTGGTAC TGACCCCAAA ATGGTTGAGA ATTTTGTGAA CGCCAAGGCT AAAACGGGGC CACTGGAAGG GCGCAAATCC AAATATATTG TTGGGGAGCC ATTCCCAGCA GAAGTGGCTA CATTCGATAT GGTATTGCAG GCCACTTTAG GTTCTATGAT TCGCCATCCT CTGCAGGCTG TATCGGCGGT GTTAAACGAG AAGCGTGACG TGTATACCTC TGAACCATTT TTAAAAGAGA AGGTTTATAA GGCTAGGCCG TTGAACGGTA TGTGGGCAGC GGCGCCGTAT TTACATAACG GCTCTGTACC TACATTGTTC GATTTGCTGT TACCGGCTAT AGAGCGCCCT GTAAGTTTTT ATGTGGGGAA CAAAGAGCTA GACCCCGTAA AAGTGGGTTT TGTTACCGAG CAGGGTGAGC ATTCAAATTT GTTTGATACA ACGCTACTTG GCAACAGTAA TAGCGGTCAT GAATTTGGCG CAGCCCTTAC AGAGGAAGAG CGCTGGGCGT TGGTAGAATA TTTAAAGACG CTGTAA
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Protein sequence | MSKKRQVIIG LAVVGALYVG YAILGKNPQQ EQFDKVGLSK DVVRLDQNWS EDIRQQFNFT TFGSRLMPYE WFLNIEVEGS EQKLRSDEVL GHLGFILQDT ARNNPEGLPV GFAVDDREET KWVGLTCAAC HAGEITYQDQ KIYIDGGPGL MDFTGFEQTV YGALKSTYED AAKFDRFAAA LKQSSPEDKT ELKETLKSRV DFFRLRLEAN ATEVPYGYGR VDAFGQIFNA IAVEAMDIPS NRHVPDGPVS IPVLWDASHL DLVQWNASAA NSEPGPLGQN ATTALAVYGQ IDMPGSKWFG YSSTIAFRNL GYIQTKLYEL TSPVWPEQIL GEIDKTKAAA GKKLYEQNCA SCHTVIDRAD PTRKLKAGAI PLEQIGTDPK MVENFVNAKA KTGPLEGRKS KYIVGEPFPA EVATFDMVLQ ATLGSMIRHP LQAVSAVLNE KRDVYTSEPF LKEKVYKARP LNGMWAAAPY LHNGSVPTLF DLLLPAIERP VSFYVGNKEL DPVKVGFVTE QGEHSNLFDT TLLGNSNSGH EFGAALTEEE RWALVEYLKT L
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