| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1262 |
|---|
| Symbol | |
|---|
| ID | 3965244 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1614478 |
|---|
| End bp | 1616052 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637920336 |
|---|
| Product | tryptophan halogenase, putative |
|---|
| Protein accession | YP_526736 |
|---|
| Protein GI | 90020909 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.69859 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 2 |
|---|
| Fosmid unclonability p-value | 0.00000259242 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATGT CTAAGTCCAG TACATCTAAG CCAGTTACAT CAATTGTTAT CGTCGGTGGT
GGTACAGCAG GTTGGATTAC TGCAGGCACC CTCGCCGCCC ACCTAAACTC AAACAGCCAA
GCGACAGTTA CCGTTACACT CGTCGAGTCG CCAACTACAC CCACAATAGG GGTAGGCGAA
GGCACGTGGC CCACTATGCG TAACACGCTT AAAAAAATGG GTGTGCGCGA AACCGATTTT
ATACGCGAAT GCAATGCAAC GTTTAAACAA GGGGCTAAAT TCTGTGGCTG GACAACCGGC
GAACAAAATG ATGGGTACTA TCATCCGCTT GTTTTGCCCC AAGGCTATGC CGATATAAAT
CTTGCTCCCC ATTGGTTAGC TAGCAATAAA GCCACGCCAT TTGCGCAATC GGTGTGCGTA
CAAGCAGCAC TGTGCGAAAC GGGTCTCGCC CCTAAATTAA TAAGCACTGC AGAGTATGCG
GCCATCGCAA ATTATGCTTA CCATTTAGAT GCGGGCGCAT TTACCCGATT TTTAACAAAG
CACTGCACAC AAAATTTACA CGTACAGCAC GTATTGGCAG ATGTAACTAG TGTGCAGGCA
AAAGAAAATG GCGATATAGA ATCCGTTAAC ACTTTGCAGG CAGGTAATAT TTATGGCGAC
CTATTTATAG ATTGCACAGG TTTCGAAGCG TTATTAATAG GCAAGCATTT CAAAGTACCG
TTTATTTCGT GCAAACATAC ACTGTTTATT GATACCGCTC TCGCTGTGCA CTTGCCTTAC
ACAGACGATC AATCAAACAT TGCTTCGCAC ACTATCTCCA CCGCGCAAAC GTCTGGCTGG
ATATGGGATA TAGGCCTACA AAACCGCAGA GGCATAGGCC ATGTATACTC CAGCGCCCAT
ACAACAGATG CCCAAGCCGA AAAAGCGCTT AGGCAATATA TCGCCAAACT ATCGCCCAAC
ACCCAAGACT TAACTGTACG AAAAATACCT ATCGAGCCAG GCCACAGGCA AACATTTTGG
CAAAATAATT GTGTGGCAAT TGGCCTGTCT GCAGGCTTTT TAGAGCCGCT AGAAGCATCA
GCATTAGTGC TTATCGAAAT GTCTGCTACT ATGCTTGCCG AACAGTTACC CACCACACGC
GCAAGCATGG CTATTATTGC TAAACGATTT AATCAAACTA ATACGTATCG CTGGCAACGC
ATTATCGACT TTTTAAAATT ACACTACACC TTAAGCAAAC GCACAGACAG CGACTTTTGG
ATAGATAACC GCGCCCCTAA CACCAACCCA GATAGCCTAA AAGAGCTGCT CGAGTTGTGG
AAATACCATT ACCCTTGGCA CAGCGATTTC GACCGCGCGG CAGAAGTATT TCCATCTGCT
AGCTATCAAT ATTTATTGTA TGGCATGCAG TACCCCACGC AGTCTAGCCA TTTGGGGATG
TCTGATAAAA ACATTGCATT AGCAAATAAA CTATTCACCC AAAACAAAGC ATTAACCCAA
AAGCTATTAA GCTCCCTTCC TAGCAACCGA GAACTAATAA ATAAAATAAA AACGTACGGA
CTAGCGCAAA TTTAA
|
|---|
| Protein sequence | MSMSKSSTSK PVTSIVIVGG GTAGWITAGT LAAHLNSNSQ ATVTVTLVES PTTPTIGVGE
GTWPTMRNTL KKMGVRETDF IRECNATFKQ GAKFCGWTTG EQNDGYYHPL VLPQGYADIN
LAPHWLASNK ATPFAQSVCV QAALCETGLA PKLISTAEYA AIANYAYHLD AGAFTRFLTK
HCTQNLHVQH VLADVTSVQA KENGDIESVN TLQAGNIYGD LFIDCTGFEA LLIGKHFKVP
FISCKHTLFI DTALAVHLPY TDDQSNIASH TISTAQTSGW IWDIGLQNRR GIGHVYSSAH
TTDAQAEKAL RQYIAKLSPN TQDLTVRKIP IEPGHRQTFW QNNCVAIGLS AGFLEPLEAS
ALVLIEMSAT MLAEQLPTTR ASMAIIAKRF NQTNTYRWQR IIDFLKLHYT LSKRTDSDFW
IDNRAPNTNP DSLKELLELW KYHYPWHSDF DRAAEVFPSA SYQYLLYGMQ YPTQSSHLGM
SDKNIALANK LFTQNKALTQ KLLSSLPSNR ELINKIKTYG LAQI
|
|---|
| |