Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1101 |
Symbol | |
ID | 3968268 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1419370 |
End bp | 1422405 |
Gene Length | 3036 bp |
Protein Length | 1011 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637920172 |
Product | TonB-dependent receptor |
Protein accession | YP_526575 |
Protein GI | 90020748 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000197247 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAGCTA ATTCCGGCTT GTTTAACAGA AAGACACTTG CAGCAGCGGT TTCGACTTGC TTGCTTGCTA GTGTAGGCGC AGAAGTTGTT GCGCAAGAGC AGCAGATGGA AGAGGTTGTA GTTACTGGTA TTAGAGCTAG TTTACAACGT TCTATGGATG TTAAGCGTGA TTCGTCTGGT GTTGTTGATG TGATCACGGC AGAAGATATT GGTAAGTTCC CTGATACGAA CTTAGCTGAA TCTATGCAGC GTATATCAGG TGTTTCTATT AGTCGAGAAG GCGGTGAAGG CTCTCGAGTT ACCGTGCGTG GTTTAGGGGC AGAATATAAC CTGGTAACGC ATAACGGTCG AACAGTGGCG CGCACAACCG GTGATCGGAG TTTTAACTTC GCTGAAATCG CGGCTGAGTT AATCGCAGGT GTGGCTGTAT CGAAAACAGC TAGTGCTGAT ACGGACAGTG GTGGTATGGG TGCTACGATA GATATGCGCA GCATTAGGCC GTTGGCTGTA GGCGAGCAAA AAGCCGTTGT TAGCGGAAAG TACATAACTG ACAGTTCTTG GGCTGGTGGG AACACACCAG AAATATTCGC TTTATATTCA AATACATTTG CAGATGACAC GATAGGTGTG TCTGTTGCGT TTGACTATCA GGAGCGTGAG AGTTCGCTGG CAAGAGCTAT GCTAGATAAT GGGTGGAAGA CGTTTACTGA AAATAACGCT CAAAATGATA CGCACCCTAA TGTAGGTATA TACAGCAAGC CACAAAGTGC TCGTTATAAA TTTGAACAGG ATAAGCGCGA AAGGTTTAAT GGCCAATTAG TTGTGCAGTG GGCTCCAACA GATTCGATTG AGGCGACATT GGATTACGAC ACTTATGAGC GCTCAATTTA TTCTGATCGC AATGAGGTTT CCGCTTGGTT TACATACCCA GAAAATTCAG ATATTGCCAC TCCTATTCAA GGGCTGTGGA CAGCATCTAA TGGTGTTGCT ACTCCACTTC TATACTCTGA GACTTATTAC TCTCCTAATA TCGCTGACAA TCTCAACGGT AATCCTAATG ATCTTTCTAT GGCCGGAGGT CACTACGCAC ATAAGTTCAC AGGTGATACT TTAGGGGTAA ATGTAAAGTG GGCGGTTAGC GACGCGTTGA ATCTAGAGTT TGACTATGCG ACTTCAGAAG CTAGTGATAC TCCAGACCAT GAGCTAGGCT CAGATGTGAA TTTATCTACT GCAGCATTTA CTCGCACGAG TACAACTATA GATACCACAG GGGAAATCTT CAGTGTAATT AACGGTGGTG GTGATGCTAC TGCTAATCAA ATGCGAGTGA CTGGTTCAGT TTTCCAAAAT AATGCAAATG ACTCAAATGT TGATCAGTTT AAATTCAAAG GTAATTTTGA GTTAAACGAG GAAAGCACAA TTGATTTTGG TGTGCGATCT ACAGAGGTAA CTAACCGGCG TCGAAGCGTA ACCGTACAGC AAAACGGATG GGGTGGCCTT GGCGTAGCGG GTGAGATGAC GGCTGCATTT GAAGGCACTG ACGCTTACGT CCGCGATCGT TTTGATGGGG CGTTTTCTAC GTTTGCTGAC GCGTCATTCC TGCCGGCCAA TGGAAGACTT AAGGACGGAA CCGATTTAAC ATCCGCTACC CCAATGAATC ACTTTTTCGA TTGGGATTTG GAGACTGTTC AGCAGCTAGC AAGAGAAAAC TATGACGTAA GTAACGAGAC AGTGGGGGAT TGTCCAGATG GTACATCTTC AGTATTCTGC TCCACAAAGG ATTATAGTCT CGGTTCTGAC AATCAAACAA CGGAGACTAC CAATGCTATA TATGTTCAGT ATACTTATCA GCTAGAAGAC CTTGAGGCAC GAGTTGGAGT TCGCCATGAG GCAACGGATG TTGAGTCAAC TGGCTTAAAT GTTCTTTACA CCGGAGCAAA CTGGGGGGCT GATACTGAAA TTTCTTTTAC TGGTCGCACT CAGAGTTACG TGACATATAA AGCCGATTAT TCTAATACCT TACCTAATAT AGATATTAGC TATAATGCAA CAGAGGATCT GGTTTTACGG TCTTCATGGA GCAAATCGAT AGCTCGTGCT GCGTATGACG AGATAGGCGC GGATGTCTCT GTAGGTGGAA ACTTTGGACG TCAAGTTGGC TATGCAACTG GCAGTCAAGG TAACCCAAGT TTGGTGCCTT ACGAATCCAA CAATTTGGAT GTGTCTATCG AGTGGTATTA CAGTGATTCT AGTTACTTTG CAGCATCTGG TTTTAGTAAG AAAATAAGTA ACTTTATAGC TGACGAAACT GTAATTTTGA ATGGCCGCTA CGCTGATGAG ATGCCGGAAA TTCATGATCC ATTTGCCGGT ACTTATACTC AAGCAGCAGT TGCAGCGCTT GGTAGTTCTG CTACGGGTCA AGAGCTTAGA ACCTACATTT TTGACAATTT CGACGGTGAG CCTGGAGTAA CTCGAGATAC CTCTGCTGGG GCGTCAACTT TTGCGGGTGA TATTATTGGT CAGCAAGCTG ATCCATTGGT TGAGTTTAGA ATGGATACAC CATCGAACTC TGGTGATGAT AGGGAGCTTC AGGGCTTAGA GCTTGCTTTA CAGCATATGT TTGGTGAGAC CGGCTTCGGT ATGCAGGCTA ACTATACGAT GGTTAACTCT GACCTAGATT ACGATACCTC TCGACCTAGT ACTAATCAGC GTCCATTATT GGGTGTTAGT GATAGTGCTA ACTTGGTTGG CTTTTACGAC TTGAACGGCT GGAATGTTCG TATGTCTTAT AACTGGAGAG ATCAGTACTT ATCAGCATAT ACCGATAGTG GTAATCAGAG TCCAATTTTT GTGGATGCGT ATTTCCAGCT TGATTTAGGT ATTAGCTACG AAGTGACTGA TAACTTGAAG GTATCATTAG ACGGCATTAA TATTACTGAA AATGCAATTA CTTATTCTGC TCGTAATAGT GATCAGAAAT TCCAGCATGA CGAGTACGGC GGTCGCTGGA TGCTAGGTGC TAGCTACTCT TTCTAA
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Protein sequence | MGANSGLFNR KTLAAAVSTC LLASVGAEVV AQEQQMEEVV VTGIRASLQR SMDVKRDSSG VVDVITAEDI GKFPDTNLAE SMQRISGVSI SREGGEGSRV TVRGLGAEYN LVTHNGRTVA RTTGDRSFNF AEIAAELIAG VAVSKTASAD TDSGGMGATI DMRSIRPLAV GEQKAVVSGK YITDSSWAGG NTPEIFALYS NTFADDTIGV SVAFDYQERE SSLARAMLDN GWKTFTENNA QNDTHPNVGI YSKPQSARYK FEQDKRERFN GQLVVQWAPT DSIEATLDYD TYERSIYSDR NEVSAWFTYP ENSDIATPIQ GLWTASNGVA TPLLYSETYY SPNIADNLNG NPNDLSMAGG HYAHKFTGDT LGVNVKWAVS DALNLEFDYA TSEASDTPDH ELGSDVNLST AAFTRTSTTI DTTGEIFSVI NGGGDATANQ MRVTGSVFQN NANDSNVDQF KFKGNFELNE ESTIDFGVRS TEVTNRRRSV TVQQNGWGGL GVAGEMTAAF EGTDAYVRDR FDGAFSTFAD ASFLPANGRL KDGTDLTSAT PMNHFFDWDL ETVQQLAREN YDVSNETVGD CPDGTSSVFC STKDYSLGSD NQTTETTNAI YVQYTYQLED LEARVGVRHE ATDVESTGLN VLYTGANWGA DTEISFTGRT QSYVTYKADY SNTLPNIDIS YNATEDLVLR SSWSKSIARA AYDEIGADVS VGGNFGRQVG YATGSQGNPS LVPYESNNLD VSIEWYYSDS SYFAASGFSK KISNFIADET VILNGRYADE MPEIHDPFAG TYTQAAVAAL GSSATGQELR TYIFDNFDGE PGVTRDTSAG ASTFAGDIIG QQADPLVEFR MDTPSNSGDD RELQGLELAL QHMFGETGFG MQANYTMVNS DLDYDTSRPS TNQRPLLGVS DSANLVGFYD LNGWNVRMSY NWRDQYLSAY TDSGNQSPIF VDAYFQLDLG ISYEVTDNLK VSLDGINITE NAITYSARNS DQKFQHDEYG GRWMLGASYS F
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