Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1046 |
Symbol | |
ID | 3967800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1335598 |
End bp | 1338285 |
Gene Length | 2688 bp |
Protein Length | 895 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637920113 |
Product | response regulator receiver /GGDEF/PAS/PAC domain-containing protein |
Protein accession | YP_526520 |
Protein GI | 90020693 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACCG ATATGACCAT CGCTAAAAAA AGCAACCGCC CCAAAGGGTT AGATTACAAA CAACTCTACG ATTTGGGTAT GGCTCGCATA CGCAGCTTAT GTAGCGAAAA GTGGACAGAT TACAACACCC ACGACCCAGG TATTACCCTA TTAGAAACAC TGTGTTACGC CATTACCGAT ATGAGTTATC GGGCGCAGAT GCCGGTAAAA GATTTATTGG CAAGCGAGCA TAACAATATA GAAAGTATGC GACAGCAGTT TTTTACTGCG CGACAAATTC TGCCAGCCAA AGCGCTTACA AGTCTAGATT ATAGAAAACT GCTTATCGAC TTGCCCGGCG TTCAAAATGC GTGGCTGCAA AAAGCAGAGC AACTCTACTT TTTAAATAAA CCTCTGAAAA AATTAGAGAC GGAGCACCCC GGTACACCAG GGGTAGAAGA AGTGTCTCTC TCTGGCTTAT ACAACATACT TATCGATTAT GTGCCTGGCA AAACACAGCC GCAGAAGCAA GCCATACTCA AGGCGGTGGA TGAGCGGCTG CAAGCTAACC GCAACCTGTG TGAAGACTTT GTATCCATCG ATGAAGTAGA TACACAGCCA TTTATTTTGT GTGGCGAAAT AGATTTAAGG TCGGATGCAG ATATTAACGA AGTGTACGCA CAAGTTTTAT ACCAAGTTCA ACAATATCTG GCTCCAGTAG TTAAAAACTA TACGCTCGAA GAGATGCTGG CTAAACAAGA TGCCAATGGC AATGCATATT CCGTAGACGA TATCTTTGAC GGGCCGCTAC TCGATTGCGG CTTTATAGAT ACGCAAGAGC TAGCGCAAGC CGAGTTGCGC ACAGATATTC GCCTGTCGGA TATTATTAAT ATTATTGTCG ATATTCCAGG CGTAGTGGCC GTAAGGGATT TAATAATAAA CCCAGTTGGT ACAGAGCAAG TGCTTGCAAA TAAATGGTTG CAAAGTGTGG CTTTGGGTAA AAAACCAGTA TTAGATAACG AAAAAACAAG GCTTATATTC TACAAGCGTG GTATGCCCAT AAGCGCAAGT AAAACAGCGG CAATCGCGCA GGCGCAATTG TTGGTAGATG CGCAACTTAG CAAGCTAGAA ACCCCTGTGG AATATGACTT TGATATACCC ATTGGCCGCT ATCGCGCCGG TGGTGCCTAT CATTCATTAC AACACCACTT ACCAGAAGTT TACGGGTTAA GTGATGTAGG GTTACCGCCC AATGCAACCG CGCAACGCAA GGCTCAGGCA TTACAGCTGA AAGGCTATTT GCTCTTTTTT GAGCAATTAC TTGCTAACTA CTTGGCACAA CTAAGCCATG TGCGCGATAT TTTTTCTAGT GATGCGAGTA AGAGTCGTAC TAACTTTTAT CAAGCAGTTA CCGACTTTGC AGATTGGCAA AAAGTCTATG CCCATGCAGA CCCAGAGCAG GCAATGCTCG CCACCATAGA TGACAGCGCA CGGGGCGTGA CCAGAAAAAA CATGTTCCTC GATAACCTTA TTGCGCGCTT TGCCGAAGAA TTTAGTGAGT TTGCCAACGT AATGTACGGG GCCTTTGGGG CGTCGCCTAT GGCGTTAATT CACTATAAGT GTGACTTTAT CAATGCTTAC CCTTCTATTA GTGCCGCGCG CGGCCTGGGT TACAACCAGA GCCTCACCCA GCTTACAGAC ATATGGAATA GCAATAATAT TTCTGGCATG GAGCAGCGTT TGTGCAAATT GCTGGGCATA GCAAATGCAA CTCGCAGAAA CTTAAGCGAT GTGGCTTACG ACATTTATGC CGAACTTGAC GCAACACCAG ATGACGAGTT TCGTTTTCGT ATTCGCGATA AAGTGAGTGG ACATATTCTG CTAAGCAGCA GCACCAAATA TGTAACGCAG GCCGATGCGC AGGCAGAAAT GCGCCGAGCC ATAATGTTTG GCAAGCTACA TGCTAGCTAC CAAATTAAGC AGGCAAGTAA TGGTAAGTAT TATTTTAATA TTGTGGATGA TACCGAGGAA GTCATCGCCA GACGCATAGA GTACTTTACT AGCCAAAGTG AACTCGAAGC CGCCATAGCC GAAGTGGTTG CCTATTTAAA TAGTGCGTAT AGCGATGAAG GCATGTACCT CATAGAAAAT ATGCTATTGC GCCCACTGCA AGAAGATGAT CCCTTCTTAC CCGTATGTGT TGATGTTAAC TGCGAAGAGT GCGCCGATCA CGACCCTTAT TCGTATCGCA TTCATATTAT ATTGCCGGCT TTTGGCAGCC GTTTTAGCAA TATGGATTTT AGGCGCTACG CCGAAAGCCT AATTCGCAGT GAGGTACCTG CGCATATACT GCCCAAAATA TGCTGGGTAA ACAAAGACGA CATGGCCACC TTAGAAAAAC TTTATCAAGA CTGGCTAAAA CTGAAGCATG GCCGCACCAG CGCGCAGCGC ACCAAAAAGC TTACAGATTT TATACGCGCA CTATATGCGG CAAAAAATGT ATATCCAGGA GAGCGATTAC ACGATTGTGA TGCCGACGAA GAAAAAAATA GATTCGTATT AGGGCGCACA GTAATTGGTT CCGTTGCAAA CAACGCACAA GCTAGTGAAC CAGAACCAGA ACCAGAACCA GAACCAGAAC CAGAACCAGA ACCAGAACCA GAACCAGAAC CAGAACCAGA ACCAGAACCA GAACCGCCTT TAAATTAA
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Protein sequence | MQTDMTIAKK SNRPKGLDYK QLYDLGMARI RSLCSEKWTD YNTHDPGITL LETLCYAITD MSYRAQMPVK DLLASEHNNI ESMRQQFFTA RQILPAKALT SLDYRKLLID LPGVQNAWLQ KAEQLYFLNK PLKKLETEHP GTPGVEEVSL SGLYNILIDY VPGKTQPQKQ AILKAVDERL QANRNLCEDF VSIDEVDTQP FILCGEIDLR SDADINEVYA QVLYQVQQYL APVVKNYTLE EMLAKQDANG NAYSVDDIFD GPLLDCGFID TQELAQAELR TDIRLSDIIN IIVDIPGVVA VRDLIINPVG TEQVLANKWL QSVALGKKPV LDNEKTRLIF YKRGMPISAS KTAAIAQAQL LVDAQLSKLE TPVEYDFDIP IGRYRAGGAY HSLQHHLPEV YGLSDVGLPP NATAQRKAQA LQLKGYLLFF EQLLANYLAQ LSHVRDIFSS DASKSRTNFY QAVTDFADWQ KVYAHADPEQ AMLATIDDSA RGVTRKNMFL DNLIARFAEE FSEFANVMYG AFGASPMALI HYKCDFINAY PSISAARGLG YNQSLTQLTD IWNSNNISGM EQRLCKLLGI ANATRRNLSD VAYDIYAELD ATPDDEFRFR IRDKVSGHIL LSSSTKYVTQ ADAQAEMRRA IMFGKLHASY QIKQASNGKY YFNIVDDTEE VIARRIEYFT SQSELEAAIA EVVAYLNSAY SDEGMYLIEN MLLRPLQEDD PFLPVCVDVN CEECADHDPY SYRIHIILPA FGSRFSNMDF RRYAESLIRS EVPAHILPKI CWVNKDDMAT LEKLYQDWLK LKHGRTSAQR TKKLTDFIRA LYAAKNVYPG ERLHDCDADE EKNRFVLGRT VIGSVANNAQ ASEPEPEPEP EPEPEPEPEP EPEPEPEPEP EPPLN
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