Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0903 |
Symbol | avtA |
ID | 3965500 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1165507 |
End bp | 1166772 |
Gene Length | 1266 bp |
Protein Length | 421 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637919965 |
Product | valine--pyruvate transaminase |
Protein accession | YP_526377 |
Protein GI | 90020550 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3977] Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.176446 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.0000000925124 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCCCTCCT TTCCTCTTTC GCCCTTTGGT GAGCGTTTAT CTGCACCTGC CGGTATTGTT TCTTTAATGG ATGACCTAGG CGAGGCCCTA AACGTAAACC CTGATATTTT GTTTTTGGGC GGGGGGAACC CTGCACGTAT CCCCGAGATG GAGCAGGCTT TCGCTCAAGC GTTGCAAGCC ATAAGCGCTA ACCCAGAGCA ATTACATAAG ATGCTGGGGG TGTACCAGTC GCCACGAGGG CACGAGGGCT TTATTGAGCG GTTAGTGCCT TTTTTGAATG AACGCTGCGG TTGGAGCATC ACCAGCAAAA ATATAGCCCT AGCTAATGGC AGTCAGTCGG CGTTTTTTAT CTTGCTGAAT ATGTTGGCAG TGCCCGCTAC CGCTAATACG CCCGCACAGA AAATTCACCT GCCCATGGCC CCCGAGTACC TCGGTTATAG CGGGCAAACC GTCGCGCCAG ATATGTTTTG TGCTCATAAA CCCCTTATTG AGCTGGTTGA GGGCAATCAA TTTCGCTACC GAGTCGATTT AGCGACTCTC GCCAACACCC AAAATGTGGC TGCCTACTGC GTATCTATGC CTACCAACCC CACGGGTAAC GTGCTGGCGC GTAGTGAAGT AGAGGCATTG CAGGTGCTTG CGGCGGAACA GCAAGTACCG CTTATATTAG ATTGCGCTTA TGGTGCGCCG CTTCCTGGAA TTGTGTATCA AGAGGTTGCC TTGCCGTGGT CAGACAATAG CGTGTACATG TTTAGCTTAT CCAAGCTTGG GTTACCTGGC GCGCGAACAG GCATCATTGT GGGGCCGGAA GAGCTGGTAG AGCAGTTTGT GAATGCCAAT ACCGTAGCTA GTCTTGCCAA TGGCAATGCA GGCCCAGCCC TAGCTGAGGC CCTAATGGCG CAGGGGCAAT TAGAGCCATT AATTCAGCAT ACCGTAACCC CTTTTTACCT TGCCAAGCGC AACCACATGC TAGGTGCGTT AGAGCAGGCC CTAGCAGGGC TGCCCTGCAG AGTGCATTGT GCCGACGGTG CCTTTTTTGT GTGGCTCTGG TTGCAAGATT TGCCTATAAG CGCCCATGCG CTCTACCTGC AAATGAAAGC CGAGGGGGTA TTAATTATGC CTGGTGAGCC TTTCTTTTTT GGCTTGGATG CACCGTGGGA CCATGCAGAG CAGTGTATTC GCTTGTCTTA CTGCCAAAGT GATGAGGTGA TTGTAAAAGC GGTAACCATT TTAGGGCGGG TATTGCGCAA AGCTTATGGG GCTTGA
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Protein sequence | MPSFPLSPFG ERLSAPAGIV SLMDDLGEAL NVNPDILFLG GGNPARIPEM EQAFAQALQA ISANPEQLHK MLGVYQSPRG HEGFIERLVP FLNERCGWSI TSKNIALANG SQSAFFILLN MLAVPATANT PAQKIHLPMA PEYLGYSGQT VAPDMFCAHK PLIELVEGNQ FRYRVDLATL ANTQNVAAYC VSMPTNPTGN VLARSEVEAL QVLAAEQQVP LILDCAYGAP LPGIVYQEVA LPWSDNSVYM FSLSKLGLPG ARTGIIVGPE ELVEQFVNAN TVASLANGNA GPALAEALMA QGQLEPLIQH TVTPFYLAKR NHMLGALEQA LAGLPCRVHC ADGAFFVWLW LQDLPISAHA LYLQMKAEGV LIMPGEPFFF GLDAPWDHAE QCIRLSYCQS DEVIVKAVTI LGRVLRKAYG A
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