| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0789 |
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| Symbol | |
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| ID | 3965842 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1018538 |
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| End bp | 1019491 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637919851 |
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| Product | endo-1,4-beta-xylanase D precursor |
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| Protein accession | YP_526263 |
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| Protein GI | 90020436 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3507] Beta-xylosidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.0130439 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.452031 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAATA AAAAAACACT AGCAGCCGGT ATTGTAGCTG CATGTTTAAC TAACGTAAGT
GCAAGCTATG CTGCCAACCC CGCAATTACC GATACTCACA CGGCCGATCC CGCTGCGTTA
GTGCACGGCG ATACCGTTTA TTTGTACGTG GGTAACGATG AAGCGAAGGA TAACCGCGTA
TTTTACGATC TTAAAAAATG GTTGGTGTAT TCATCAAAAG ATATGGTGAA CTGGACCAAT
CACGGTTCGC CGTTAGCTGC AACGGATTTT AAGTGGGCCA GCGGCGATGC GTGGGCGGCG
CACACGGTAG AAAAAGATGG CAAGTTTTAT TGGTATACCA CGGTGCGTCA CGCAACCATT
AATGGTTTTG CCATTGGCGT TGCAGTAAGT GATAGCCCTA CAGGGCCATT CAAAGATGCT
TTGGGTAAAG CACTAATAAG TAATGACATG ACCACCGATA CCGATATTGA TTGGGACGAT
ATAGACCCAG CAGTATTTAT TGACGACGAT GGCCAAGCGT ATATTTTTTG GGGCAACACC
AAACCGCGCT GGGCCAAGTT AAAACCCAAT ATGATTGAAC TAGATGGACC TATTCACGCA
ATCGATATTC CACACTTTAC CGAAGCGCTA TACGTGCACA AACACGGTGA ATATTACTAC
TTAAGCTATG CGACAGGCTT TCCAGAAAAA ACAGCTTACG CTATGAGCAA ATCTATAGAA
GGGCCGTGGG AATACAAAGG CATTCTTAAT GAATTGGCTG GTAACTCAAA TACTAATCAC
CAATCTGTCA TCGATTTTAA GGGCAAGTCA TACTTTATTT ATCACAATGG TGGCTTGGGT
CAAGATGGCG GTAGCTTCCG TCGCAGTGTA TGTATCGATT ATTTGAACTA CAACGCGGAT
GGTACTATCA AGCGAATTGT AATGACATCA GAAGGTGTAG ACCCAGTTAA ATAA
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| Protein sequence | MFNKKTLAAG IVAACLTNVS ASYAANPAIT DTHTADPAAL VHGDTVYLYV GNDEAKDNRV
FYDLKKWLVY SSKDMVNWTN HGSPLAATDF KWASGDAWAA HTVEKDGKFY WYTTVRHATI
NGFAIGVAVS DSPTGPFKDA LGKALISNDM TTDTDIDWDD IDPAVFIDDD GQAYIFWGNT
KPRWAKLKPN MIELDGPIHA IDIPHFTEAL YVHKHGEYYY LSYATGFPEK TAYAMSKSIE
GPWEYKGILN ELAGNSNTNH QSVIDFKGKS YFIYHNGGLG QDGGSFRRSV CIDYLNYNAD
GTIKRIVMTS EGVDPVK
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