| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0650 |
|---|
| Symbol | |
|---|
| ID | 3964979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 821795 |
|---|
| End bp | 823471 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637919711 |
|---|
| Product | RhoGEF guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases-like |
|---|
| Protein accession | YP_526124 |
|---|
| Protein GI | 90020297 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5422] RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.75821 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAACCC AAGGTAAACC TTGTTTAAAA AAATTGTGGC CGGCGTTAGC GCTTGCTGCT
GCTGTAGCTA GTCCGAACGC ATTTTCTGCG TGTGAGTATG TTGTATCCAA TCAATGGGAT
TCAGGGTATT CGGCGACTAT TAAAATTCAT AACGATACAA ATTCAACCAT TAATGGTTGG
AATGTGAATT GGCAATATAG CGGCGATAAC CGCGTAACCA ATTTATGGAA TGCGGCGTAT
GTAGGTAGTA ACCCATACTC TGCAAGTAAC CTTTCGTGGA ATAGCACCGT TGGTGCCGGT
CAAACTATCG AGTTTGGTTT CCAGGGGGCC AAAAACGGCG GCAGTGCCGA AGTGCCCGTT
GTTACGGGTG ATGTGTGTAG TGGTGGTGGC AGTTCTTCTG GTTCATCATC TAGCTCTTCA
TCGAGTAGCT CTACAGGTAG TTCTACAAGC AGTTCTTCAA GTAGCTCTTC AAGTAGTTCC
ACAGGCGGTT CCACAAGCAG TTCATCAAGC TCGTCTTCTA CCGGTGGCAA TGGTGGTGCA
CAGCAATGCA ATTGGTACGG TGAAATTCGC CCACTGTGTA ACAATCAAGA TAGCGGCTGG
GGTTGGGAAA ATCAGCAAAG CTGTATCGGT CGCGACACCT GTTCCAACCA AAGTGGCAAT
GGCGGTATAA TTGGCGGTAG TTCTTCTAGC TCGTCCAGTT CTTCAACCGG TTCATCGAGC
AGCTCTTCGA GTTCTTCGTC AAGCTCATCC AGCTCTTCTA GTTCAACGTC AAGCTCATCC
AGCTCTTCTA GTTCAACGTC TTCAAGTTCT TCGTCGAGTT CATCATCTAG CTCTTCAAGT
TCTACAAGTA GCTCGTCGTC TTCGTCTAGC TCATCGAGTA GTTCTTCAAG CAGTTCGACG
TCTAGCAGTA GTTCTTCATC TTCGAGCTCT AGCAGTTCAT CTAGCTCTTC AAGCAGTTCT
TCTAGTAGCT CTTCTTCAAG TGGTGGCGGT GTTATTTTTA GCGCAGACTT CGAAAGCGAT
AGCGATAGTA CACAGCCAGC AGGTTGGGAT AATTTTATTG GCTGGCGTCA AAACGGGCCA
AACCCAAATG GTTCGACATT TGCGTTGGTG GAATCAGGTC GCGCACACAG TGGTAACAAC
GCTGTGCACT TCAGTGGTGG CGCAAGCCCA GCTATGATTG CTCGCGCTTT GCCTGCAGAT
TTAGATACTT TATATGTGCG TGCTTGGGTG TATATGACTC GCCAATTGGG TATGAACCCC
GGTGATAACC ATGAAACGCT CATCGCCTTG CGTGGCTCTG CTGGCAATGC AAACAACGAA
GTGCGTTTTG GTGAAATTAA AGGGGTAATT GGTACTAACG AAGTACCGAG CGATAACATT
GCACCTACTA TGGCAAGCTG GGGTGGTGGC CCTGCCTATG CATCAGATAC TTGGCATTGT
ATCGAAGTGG CATTTTTATC GCAGCCAGCG TACGACACTG TAAATGCATG GGTTAACGAC
GCGCTTGTAC ATACTATTGA TGAAGGCTCT GACTGGAACA ATGGTGCCTT AGAGGCGGAT
TGGTTAAGTA ATAAATACGT AGAGCTAGCC TTCGGCTGGC ACAGCTTTAG CGGCAACGAT
GTAGATGTAT GGATGGATGA TATCGTTGTA TCCACAACCC CAATCGGTTG CGACTAA
|
|---|
| Protein sequence | MSTQGKPCLK KLWPALALAA AVASPNAFSA CEYVVSNQWD SGYSATIKIH NDTNSTINGW
NVNWQYSGDN RVTNLWNAAY VGSNPYSASN LSWNSTVGAG QTIEFGFQGA KNGGSAEVPV
VTGDVCSGGG SSSGSSSSSS SSSSTGSSTS SSSSSSSSSS TGGSTSSSSS SSSTGGNGGA
QQCNWYGEIR PLCNNQDSGW GWENQQSCIG RDTCSNQSGN GGIIGGSSSS SSSSSTGSSS
SSSSSSSSSS SSSSSTSSSS SSSSSTSSSS SSSSSSSSSS STSSSSSSSS SSSSSSSSST
SSSSSSSSSS SSSSSSSSSS SSSSSSSGGG VIFSADFESD SDSTQPAGWD NFIGWRQNGP
NPNGSTFALV ESGRAHSGNN AVHFSGGASP AMIARALPAD LDTLYVRAWV YMTRQLGMNP
GDNHETLIAL RGSAGNANNE VRFGEIKGVI GTNEVPSDNI APTMASWGGG PAYASDTWHC
IEVAFLSQPA YDTVNAWVND ALVHTIDEGS DWNNGALEAD WLSNKYVELA FGWHSFSGND
VDVWMDDIVV STTPIGCD
|
|---|
| |