Gene Sde_0361 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_0361 
Symbol 
ID3964827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand- 
Start bp447383 
End bp448021 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content49% 
IMG OID637919424 
ProductTetR family transcriptional regulator 
Protein accessionYP_525837 
Protein GI90020010 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.23201 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACTCAT CACCCGCACC CACTAAACGC TCAACCCCCA ACCGGCTAAT GGATGTGGCG 
CAGGCCATGT TTGTTAAAAA CGGCTACCAC GGCGTAGCGG TGGATAAAAT AATTGCGCAA 
ACAGGGGTAA GTAAAGGCAC GTTTTTTTAC CATTTCAAAT CGAAAGAAGA CTTAGCCCAG 
CGCCTGCTGG AAAGGTACTT CGAGCGTATA GCCGCAGCAG CCAACGCAAT TGGCACCGCC 
GCCGCACAAC AGAGTGACGA CCCGCGACAA ATTCTGGATA TATGTTTAAC CGAGTTTGAA 
AACCTATTTA ATGGCCGCCA TGTACAGGGC GGCGCCGACG AAAGCTTAGA TGGCTGCCTT 
ATGGCCGCGT TTAGCTACCA ACTGTTTAAC CATATTCCCA GCCTGCGCGC CATAAGCGCT 
CAAGCCATTA ATCGGTTTAG CACAGCCTAT GCACCACTCT TTGATGAAGT ACTGGCAACG 
GCTAATAGCC CGACTGGCAT TAGCGGTGAA ACACTGAGTA AACACTACTT TGCGCTTATG 
CAAGGCACCC TACTTGTAAG CCGCATAGAT CCAGCTTGGA CTGATTTTAA ACAGCAAGTA 
GACAGCTTTA AAAAAATGCT TAACGCGTTG CTTAAATAA
 
Protein sequence
MNSSPAPTKR STPNRLMDVA QAMFVKNGYH GVAVDKIIAQ TGVSKGTFFY HFKSKEDLAQ 
RLLERYFERI AAAANAIGTA AAQQSDDPRQ ILDICLTEFE NLFNGRHVQG GADESLDGCL 
MAAFSYQLFN HIPSLRAISA QAINRFSTAY APLFDEVLAT ANSPTGISGE TLSKHYFALM 
QGTLLVSRID PAWTDFKQQV DSFKKMLNAL LK