| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0353 |
|---|
| Symbol | |
|---|
| ID | 3964819 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 437591 |
|---|
| End bp | 438973 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637919416 |
|---|
| Product | TonB system biopolymer transport component |
|---|
| Protein accession | YP_525829 |
|---|
| Protein GI | 90020002 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0811] Biopolymer transport proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.899068 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.349209 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATGA CCATCACTAA AAGCATAGTA ACTTTTGCTG CAGCGGCCAT CTTCGCACTT
TCTGGTGCAG TGTCTGCGCA AAGCAACGAT AAAGCGGCTT CCTTGGACGA GCTGCTAAAA
ATGGTTAAAG ATTCTAAGAT ATCTGAAACC GCTGAATACA AACAGCGCGA AGCAGACTTC
CGTCGCAAGA AGTCAGAGCA AGCGTCTCTA CTTAAGCAAG CTGAGCAAAC TCGTACCAAC
GAAGAAAACC GCTCTGCTCG TTTAGAAGCA CAGTACAAAG AACAAGAACT CGCTATTCAA
CAAAAACGCG CTCAATTCGA AGAGCGTTTA GGTTCGTTGA AAGAGTTATT TGGTCACTTA
ACATCTACCG CTGGTGACTT GCGTTCTAAC ATGGATGTAT CCATCGTTAG TGCTCAGTAC
CCAGGTCGTA CCGAATTCTT AGATACGCTA ATCGAAAAAA TGAATAGCGA AACTAAGTTG
CCAACTATCG AAGAAGTTGA GCGCTTGTGG TACGAAACTC AACGCGAAGT GGTTGAGTCG
GGCAAAATTG TTAAATTCCA AGCAGAAGTT GCTAGCCCAT CGGGCGACTC AGCAATGACC
GAAGTGGTTC GAGTTGGTAA TTACAACTTA ATCGCTAACG GCGCTTACCT TGTTTACGAT
GAAGGTAAAT TGCAAGAGCT ACCAATGGAT AACCAAGGTC GCTTAACCGC GGGTGCAGAC
GCAATTGCTG ATGCTAACTC TGGTTTCGTT AAGCTAGCTA TCGACCCTGC TGGTCCTCTT
GGCGGCAACT TGCTTAAAGC GTTGGTTATC AACAGTAAAG GCTTGAAAGA GTACTACGAA
GATGGTGGCC TAGTAGGTAC TATCATCTTG GCAGTAGGTG CTATTGCTAT CTTAATCGCT
CTGTGGCGCT TCTTTGCTCT ACAAGCTATT AGCAGCAAGG TTAACTCTCA GCTTAAAGCT
AAGTCAGCTA ACCCGAACAA CCCATTGGGT CGTATCTTGA AAGTTGCTGA AGACAACCCA
GGAATCGATA CTGAATCCTT AGAGTTGAAG CTAGAAGAGG CTATTCTTAA AGAGCGTCCC
GCTATTGAAA GCTGGTTGGG TGCCATTAAG ATTATCTCTA TGATCGCTCC TCTAATGGGT
CTATTAGGTA CCGTAACCGG TATGATCGTA ACGTTCGAAG CGATTACTAT CTTCGGTGCT
GGCGATCCTA AGAACATGGC AAGTGGTATC TCGGGTGCCT TGATGACTAC AGTAATGGGT
CTGATCGTAG CTATCCCAAC CGTACTACTC CACACTTGGT TGAACGGTAA AGCTAAGCAC
ATTACTCATG TTCTTGATGA GCAAAGTGCA GGCATCATTG CTGAGAAATC AGAACAGAAA
TAA
|
|---|
| Protein sequence | MKMTITKSIV TFAAAAIFAL SGAVSAQSND KAASLDELLK MVKDSKISET AEYKQREADF
RRKKSEQASL LKQAEQTRTN EENRSARLEA QYKEQELAIQ QKRAQFEERL GSLKELFGHL
TSTAGDLRSN MDVSIVSAQY PGRTEFLDTL IEKMNSETKL PTIEEVERLW YETQREVVES
GKIVKFQAEV ASPSGDSAMT EVVRVGNYNL IANGAYLVYD EGKLQELPMD NQGRLTAGAD
AIADANSGFV KLAIDPAGPL GGNLLKALVI NSKGLKEYYE DGGLVGTIIL AVGAIAILIA
LWRFFALQAI SSKVNSQLKA KSANPNNPLG RILKVAEDNP GIDTESLELK LEEAILKERP
AIESWLGAIK IISMIAPLMG LLGTVTGMIV TFEAITIFGA GDPKNMASGI SGALMTTVMG
LIVAIPTVLL HTWLNGKAKH ITHVLDEQSA GIIAEKSEQK
|
|---|
| |