Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0328 |
Symbol | |
ID | 3966508 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 409270 |
End bp | 410574 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637919390 |
Product | ABC transporter permease |
Protein accession | YP_525804 |
Protein GI | 90019977 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.33045 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAGTG TTAAATCAAT TAGCCACATA GAAAGCGCAC AACCAACCAG CAGCGCGGGC ATGGATAGAA AAATTGCCAA GCCCCCACAG CGCAAAAAGC TTGTGCTGGC CGGAGGTGTG TTACTTGGCT GCGCAGTATT GGTTGCAACA TTGCTAAGTG TAAGTGGCGG CAGGTCATTA AATGTGGATA GCCAGCGCAT AGCCACTGGT GTAGTTAGCA AAGGTAGCTT TGAAGATTTT ATCCCCCTGC GTGCGCGGGT AACGCCAGCC AAAACGCTTT ACTTAGATGC GGTAGAAGGT GGGCGTGTAG AGCGAGTGCT AGTAGAAGAT GGCGCGCAAC TACAAGCGGG CGATTTAATT GTGGAGCTTT CAAATGCGAG CTTGCAGCTA AGCGTGTTAA GTAACGAAGC GCAAGTAGCC GAACAGTTAA ACAATATGCG CTCTATAGAA CTTAGTTTAG AGCAAAATAG GTTGCAGCAT AAACGCAACC TCGCCGATAT AGATTATCAA ATAAAAATGC TCACGCGACA GTTGCAGGCT GAACAAAAAT TATTAGAAAC GCAATCCCTT AGTCAATCGC AATTTGATAA TACACACGAT ACTTTAAATT GGTACCAAGC TAGAAAGCAG CTCACCTTAG AAAGCCAAGC CTCCGATGCC AAAATGCAAG AGGCGCAATT AATTTTTTTA CAAGAAACAA GTGAGCGTTT GCAAAATAGC TTGGCGTTAT CGCGCCAAAA TTTAGACAAC ATGAATGTAC GTGCACCGGT AGCCGGCAAA CTTTCTGGGT TTGATGTTGA AGTAGGGCAG AGCATTGGCC GCGGTGAACG CCTAGGGCAA ATAGATACAC CCAATGACTT TAAGCTAAGC GCGCTTATAG ATCAGTTTTA TCTAGGCCGA GTTGATATTG GCCAGCGGGC TAGTTTTGAA GGCTACGAAC TCACAATAAG TAAAATTTAC CCACAAGTGC AAAACGGCCA GTTTGAAGTG GATTTTACCT TTGTAGGTGA ACAGGCTAGC AATATTCGCA GGGGCCAAAC TATTCAATTA AAACTTGTAC TAGGCGACGC CACCGAAGCC CTGCTAATTC CAAATGGTGC CTTCTATCAA GATACCGGCG GCAACTGGAT ATTTGTTATT AGCCCAAATG GCGACCATGC AATAAAACGC AATGTACGTT TAGGCCGGCG CAACAGCCAA TTTATAGAAG TGCTTGAAGG TTTAGAGGAA GGGGAGCGTG TAGTAACAAG CCCTTATAGC AGCTATCAAG ATTTACAGAA ATTAAACTTA TCTAGTAGCG AATAG
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Protein sequence | MSSVKSISHI ESAQPTSSAG MDRKIAKPPQ RKKLVLAGGV LLGCAVLVAT LLSVSGGRSL NVDSQRIATG VVSKGSFEDF IPLRARVTPA KTLYLDAVEG GRVERVLVED GAQLQAGDLI VELSNASLQL SVLSNEAQVA EQLNNMRSIE LSLEQNRLQH KRNLADIDYQ IKMLTRQLQA EQKLLETQSL SQSQFDNTHD TLNWYQARKQ LTLESQASDA KMQEAQLIFL QETSERLQNS LALSRQNLDN MNVRAPVAGK LSGFDVEVGQ SIGRGERLGQ IDTPNDFKLS ALIDQFYLGR VDIGQRASFE GYELTISKIY PQVQNGQFEV DFTFVGEQAS NIRRGQTIQL KLVLGDATEA LLIPNGAFYQ DTGGNWIFVI SPNGDHAIKR NVRLGRRNSQ FIEVLEGLEE GERVVTSPYS SYQDLQKLNL SSSE
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