| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0291 |
|---|
| Symbol | |
|---|
| ID | 3965430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 361672 |
|---|
| End bp | 362946 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637919353 |
|---|
| Product | helix-turn-helix, AraC type |
|---|
| Protein accession | YP_525767 |
|---|
| Protein GI | 90019940 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.457062 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0000712833 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCA TAGTCGTTTC GTTATTACTT ATTACTTTTG CCGGCATTAT TGCTTCTGGC
TGGATAATAG ATAACGCCTT TAGCCGCTAT TCTCAACAGG CGCACAGCCA ATATCAAAGT
GCCGATGAGC ATTACGGGCA GGGGCTGGCC AAGTTAATTA ATGCTAGTGC CCAGCCGCAG
CAATTGGTGC AGCAGTGGAA TGCCAGCAGC GAGCGATTCA TTTCTTTACT AGAACTATCC
GATTTGGTAC TACCGCATTC TTTAGAGCAG GTACTAAATA CTACAGGGCA AATTACGCTG
CAATCGCAAG CGGGCGTAAC CATGTATTTT GCGGTGCCCA GACACCAACT TATATTAGCT
GTTAATCGGC CCGATATTCA CACAGGCATA AACGCTACCC AAGTTATTTT TACTTTGGCA
TTTTATGGCG CAATATTTTT GGTGCTTATG TTGTGGCTTA CACCATTGCT GTTAGATTTA
AAACGCTTGC GCGCCGCGGC GAATGCATTC GGTTTGGGCA ACTTAAAACA GCGTATTGCG
TTATCCCGCT GGTCACACAC GCGCGATATT CACAGCGCGT TTAATGCTAT GGCAGATAAA
ATAGAGCAGT TACTAACCGA TAATAAATTG CTCTCTAATG CACTCTCCCA TGAGCTTAAA
ACACCATTGG CGCGGCTGCG TTTTGGGTTC GATATGCTAG CCGAAGAGCA AGACAGCGCT
CGCAAGCAAC AATATACCCA CCGCATAAAT GAAGACTTAA ACGAAATGCA AAGTATTATT
AACGCTTTGC TAGATTACGC CCGTTTAGAT TCGGTAGAGG CCAGTGTTAA AAAACAAGTT
TTTAATGCGC AAGAGCGGCT AAATAATTGC GTGCACGCTC AATGGGTAGA CGCAAAGAAA
ATAGACATAC ACAATAATCA TATAGCGCAT GTAGAGTGCG ACCCAAAACA TTTTGATTTA
GTGCTAAGCA ATTTAATTAA AAACGCGTTG CTGTACAGCA ACTCGCACAT TGCAATTCGC
ACAGAACTAA CCGCCGCACA GTTAACCCTA TACGTAGAAG ACGACGGCCC AGGTGTAAGC
GAGCACGAAA TAAAAAATCT ATTTAAACCT TTTGTGCGCG GCGAGCACAC TGCAGGCCAA
TCTGGCCACG GTATGGGTTT AGCTATTGTG AACCGCGTGG CGCAGTGGAA TAAATGGCAA
GTAACCATCG GTCGCTCGCC ATCTTTAGGT GGAGCTCAAT TTTGCATTGC GCTGCCGTTA
GGGGCACAAA ACTAA
|
|---|
| Protein sequence | MSRIVVSLLL ITFAGIIASG WIIDNAFSRY SQQAHSQYQS ADEHYGQGLA KLINASAQPQ
QLVQQWNASS ERFISLLELS DLVLPHSLEQ VLNTTGQITL QSQAGVTMYF AVPRHQLILA
VNRPDIHTGI NATQVIFTLA FYGAIFLVLM LWLTPLLLDL KRLRAAANAF GLGNLKQRIA
LSRWSHTRDI HSAFNAMADK IEQLLTDNKL LSNALSHELK TPLARLRFGF DMLAEEQDSA
RKQQYTHRIN EDLNEMQSII NALLDYARLD SVEASVKKQV FNAQERLNNC VHAQWVDAKK
IDIHNNHIAH VECDPKHFDL VLSNLIKNAL LYSNSHIAIR TELTAAQLTL YVEDDGPGVS
EHEIKNLFKP FVRGEHTAGQ SGHGMGLAIV NRVAQWNKWQ VTIGRSPSLG GAQFCIALPL
GAQN
|
|---|
| |