Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_0180 |
Symbol | |
ID | 3967964 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 223457 |
End bp | 224593 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 637919239 |
Product | AraC family transcriptional regulator |
Protein accession | YP_525656 |
Protein GI | 90019829 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.34579 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGAATT TTTACAAACA AATCACGGCT TATTTTTTCG TAAAATTACT GCTAAGTTTT GCTGTTATTT TTCTTGCCTA TCATTTTATG GAGGTAAGCA TACCGCTGCT ACCAAAAGAA AAAAGTCCCT ATGCATGGTC GCTTAGGGCT TTTTCAGATC AACTGCTTGG CGGAAAATCC ACAGTGACGT TTCTGGGCGA CAGTCGCTCT ATTTACTATC GCTATCAAGT AAATACTGCC GTAAAATTCC CTTTCGCAGG CGCTCGCCTT ACCTTCGAAA AACTAGAAGA CCTTAGTCGC TACACGGCTG TTTCTTTTAC CTCTCAGTGT GATAAATACA ATGTTATGAC ATTTCACATA CACAGCTTTG ATGCCCATAT TACGAAAGAC GATGACTTCT ATAGCTACCG CTTTGCCGAA AAAGATTTTA CTTGTGAAGC AACTAAAAAT CAGCACATCA TTGATTTAAA GTATTTAAAT GTACCAGTCT GGTGGTTAAA ACAAAATAAT ATACCAGTAT CCGATACACA TTATAGGTTG GACAAAACAC GAGCTCTATC GTTCGATAAC GACCATCGAG GGCCACTAGG AATTCCCTTG CACACACATA TCGAAAATTT AACATTGCAC TATCAGGATT GGCGATACAT TTGGTTAGCT ATTGGGTTAT TAACTGTAAC TTGGCTAATT TTTTTAATTT ATTGGTTAAA GCGTTATAGT CGGTGTTTGG TATCGACAGT GAAAATGAAT ATCGCGGAAA ATAAACCGTT CATCGCCTAT CAACAACTAT CACTGGAACC CCACCGAGAT AGAGAAAAAA CAGAGTTGTT ACGATTCATG GGTTTAGAAT TTACCAACCC GGAAATGAGC CTGGAATATA CGGTTAAAAA CCTCGGTCTT AATCGAACAA AAATAAATAA TTTATTAAAA GAAGAGTTGG GACTTACGTT TACAGCTTAT CTGAATAAAT TGCGCTTGGC AGAGGCATCA AAACTAATTT CCAATCGGGA AAACAGAAAT ATATCCGAAA TCGCATTTTC TGTAGGCTTT AATAACATTT CCTATTTCAA TAGGCTATTT AAAAATGAGT TTGGCTGTAC CCCTAAAAAA TTCGAATCGA TATCAAAAGA TAGATAA
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Protein sequence | MLNFYKQITA YFFVKLLLSF AVIFLAYHFM EVSIPLLPKE KSPYAWSLRA FSDQLLGGKS TVTFLGDSRS IYYRYQVNTA VKFPFAGARL TFEKLEDLSR YTAVSFTSQC DKYNVMTFHI HSFDAHITKD DDFYSYRFAE KDFTCEATKN QHIIDLKYLN VPVWWLKQNN IPVSDTHYRL DKTRALSFDN DHRGPLGIPL HTHIENLTLH YQDWRYIWLA IGLLTVTWLI FLIYWLKRYS RCLVSTVKMN IAENKPFIAY QQLSLEPHRD REKTELLRFM GLEFTNPEMS LEYTVKNLGL NRTKINNLLK EELGLTFTAY LNKLRLAEAS KLISNRENRN ISEIAFSVGF NNISYFNRLF KNEFGCTPKK FESISKDR
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