| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_0055 |
|---|
| Symbol | |
|---|
| ID | 3965363 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 60987 |
|---|
| End bp | 62588 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637919114 |
|---|
| Product | hemolysin activation/secretion protein-like |
|---|
| Protein accession | YP_525531 |
|---|
| Protein GI | 90019704 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.193341 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATGG CAAGTTTTTT CTCGCACCGC TGTTGGCAAT TGGCCTGCTG CGTTGGACTG
CTGTGCGCCG CAGTGATGGC GCGCGCCGAT ATAGCCATTA ACCTAGATAA CGACCAATCG
CGCCTAGAAG TAAAAGCGAT TGTTATTGCC ACTGGCGGCG AAGGCGAGCT TAAGGCCAAT
CGCCTGCGCG ACCTCACTCG CTTGGCCAGT AGCGAGCGCC GTAAATACCC CGCCACTATC
TCTATTGACG AGTTACACCG CATAGCCGAT GTGCTTACCG TTGCGGTGCG GGCAGAGGGC
TACACCTTTG ATAGCCTCTA CTTACCGCCG CAAACCGTGG CTAACGGTAT AGTGCAGTTT
CGCTATCAAA AATCCGTTCT GGTAAGTATC AACGTAATTA ACAATACCGA CTACGACGAC
AGGCGCCTAA GCAAGCCCTT TGCACCTGTG GTGGGTGAGC GCGTGTTTGC CCCGCGTATA
GAAAACATTG TGTATGCCCT GCAGGCCCAG CCTACTTTAT CGGTATTTGC CTTTTATTCG
CGCGGGCCGC GGCAGGGTGA GGTGGTGCTT AATTTGCGGG TCGATGAGCG CAGCCAACCG
TTTTATTCCC TGCGCGCAGA AAACTATGGT TCGCAGGCCA CAGGTAAATA CCGCATGGTG
GGCGAGCTTA AGGGCTATTC GCTGCTAGGG GATTTTGATC GCGCCACGCT GGCCGTGCTT
TCCACCCAAG GTGAGGGCAC CACCACCTAC GGCTACCTTA ATTACCGCTA TACCTTGCCA
AGCTTAAACA CCTGGTGGGA GTTGGGCGTG GGCGACACTC GCTACGCGCT GGGCAGCAAT
TTTGAACAGC TGGAAGCAAC CGGCAGCTCG CGCAGCCTGC GTTTGGATGT TAACCGCGCG
CTTAACCACA ACCCCAAGCA CAGCCGCCAA ATTGGCTTGG GTGGCTTTCA CAAAACCAGC
AGCTTTGGCA GCGACGATGC GCTGTTTGAC GACGCCCTAG GGCGCGAAGA AACAAGCATG
GGTGCCGCTG TTAATTACAG TGCTAACCAC ACCTTTGGCA AAGGGCGCAT CGCCTTTGGT
GCCAGTGCAA TTGGCGGGGA ATTTAGTTTG GATGAGGGCG AAGGCCAAAC CCTAGCCAAG
CTGGAGTATC ACTTTTTTGC CTCCACTCAG TTTAATTCAA GCTCGCGCTT CGCCATTCAG
CCCCGTTTAT TTATACGCGG GCAGCTGGCC GATAAAACAC CGCTACCCGC CATAGAAACC
TTAAGCCTTA GCGGTTTTTA CGGCGTGCGT GCCAGCCCCG TGGGAACAGT AAGTGCAGAT
ACCGGTGTAT TGCTAAGTGC AGAACTGCAT ATGCCAGCGT TGGTAAATAC CCAATTGGCC
GAGCAGCCAT TTAGCGCGGC GCCCTATATG TTTTTTGATT CCGGAAGTGG CGAGCAATAC
CAAGCCGACG ACGCCAGTGC ATTAAGTGTT AGCCAAAGTG GCTTTGGCGC GGGCTTAAAC
CTGCGCTGGG GGCGATTTTC TGCCAATGCC ACCTATGCCA GTGCAACCAA CCAAGAGGTA
AATGGCGATG ACCAAGTCTA TGTCCAATTG CGCTGGCAAT AA
|
|---|
| Protein sequence | MTMASFFSHR CWQLACCVGL LCAAVMARAD IAINLDNDQS RLEVKAIVIA TGGEGELKAN
RLRDLTRLAS SERRKYPATI SIDELHRIAD VLTVAVRAEG YTFDSLYLPP QTVANGIVQF
RYQKSVLVSI NVINNTDYDD RRLSKPFAPV VGERVFAPRI ENIVYALQAQ PTLSVFAFYS
RGPRQGEVVL NLRVDERSQP FYSLRAENYG SQATGKYRMV GELKGYSLLG DFDRATLAVL
STQGEGTTTY GYLNYRYTLP SLNTWWELGV GDTRYALGSN FEQLEATGSS RSLRLDVNRA
LNHNPKHSRQ IGLGGFHKTS SFGSDDALFD DALGREETSM GAAVNYSANH TFGKGRIAFG
ASAIGGEFSL DEGEGQTLAK LEYHFFASTQ FNSSSRFAIQ PRLFIRGQLA DKTPLPAIET
LSLSGFYGVR ASPVGTVSAD TGVLLSAELH MPALVNTQLA EQPFSAAPYM FFDSGSGEQY
QADDASALSV SQSGFGAGLN LRWGRFSANA TYASATNQEV NGDDQVYVQL RWQ
|
|---|
| |