Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3845 |
Symbol | nikA |
ID | 6273105 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3570697 |
End bp | 3572271 |
Gene Length | 1575 bp |
Protein Length | 524 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641727701 |
Product | nickel ABC transporter, periplasmic nickel-binding protein NikA |
Protein accession | YP_001882136 |
Protein GI | 187730225 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
TIGRFAM ID | [TIGR02294] nickel ABC transporter, periplasmic nickel-binding protein |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCTCCA CACTCCACCG CACTCTATTT GCGCTGCTGG CTTGTGCGTC TTTTATCGTC CATGCCGCTG CACCAGATGA AATCACTACC GCCTGGCCGG TGAATGTCGG GCCACTAAAC CCGCACCTTT ACACGCCTAA CCAGATGTTC GCCCAGAGCA TGGTTTATGA ACCATTGGTG AAATATCAGG CAGACGGTTC GGTGATCCCG TGGCTGGCAA AAAGCTGGAC TCATTCAGAA GATGGTAAAA CCTGGACCTT CACCCTGCGT GATGACGTGA AATTATCCAA CGGTGAACCG TTCGATGCCG AGGCGGCGGC AGAAAACTTC CGCGCAGTGC TCGATAACCG TCAACGTCAC GCCTGGCTGG AGCTGGCAAA CCAGATTGTT GATGTTAAAG CACTCAGTAA AACAGAGCTG CAAATTACCC TGAAAAGCGC CTACTATCCT TTCCTGCAAG AACTGGCCCT GCCCCGTCCT TTCCGTTTTA TCGCTCCCTC GCAGTTTAAA AACCATGAAA CCATGAACGG AATTAAAGCG CCGATTGGCA CCGGACCGTG GATTTTGCAG GAATCGAAAC TGAATCAGTA CGATGTCTTC GTCCGTAACG AAAACTACTG GGGCGAAAAG CCAGCGATTA AAAAGATCAC CTTTAACGTC ATCCCGGACC CGACTACCCG CGCGGTGGCG TTTGAAACTG GCGATATCGA CCTGCTGTAC GGAAACGAAG GGTTATTACC GCTCGATACC TTCGCCCGCT TTAGCCAGAA CCCGGCTTAC CATACCCAAC TGTCACAGCC GATCGAAACC GTGATGCTGG CGCTTAATAC CGCCAAAACC CCCACCAATG AGCTGGCAGT ACGTGAAGCT CTTAATTACG CGGTAAACAA AAAATCGCTG ATTGATAACG CGTTGTATGG CACCCAGCAG GTCGCCGACA CCCTGTTTGC CCCTTCTGTG CCCTACGCCA ACCTCGGCCT GAAACCGCGC CAGTACGATC CGCAGAAAGC GAAAGCGTTG CTGGAAAAAG CCGGTTGGAC GCTGCCTGCG GGCAAAGACA TCCGCGAGAA AAATGGTCAG CCGCTGCGCA TTGAACTGTC GTTCATCGGC ACCGATGCGT TAAGCAAATC GATGGCGGAA ATCATTCAGG CTGATATGCG CCAGATTGGC GCAGATGTCT CGCTGATTGG CGAAGAAGAG AGCAGTATCT ATGCTCGTCA GCGCGACGGT CGTTTTGGCA TGATTTTCCA CCGCACCTGG GGCGCGCCAT ACGATCCACA CGCCTTCCTG AGTTCAATGC GCGTACCGTC GCACGCTGAC TTCCAGGCAC AGCAAGGATT AGCCGACAAA CCGCTGATTG ATAAAGAGAT CGGCGAAGTG CTGGCGACCC ATGACGAAAC GCAACGTCAG GCGCTGTATC GCGACATTCT GACCCGTCTG CATGACGAGG CGGTTTATCT GCCTATCAGT TACATCTCAA TGATGGTGGT ATCAAAACCG GAGCTGGGTA ACATCCCCTA CGCGCCGATC GCCACCGAAA TTCCGTTCGA ACAGATTAAA CCGGTGAAAC CTTAA
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Protein sequence | MLSTLHRTLF ALLACASFIV HAAAPDEITT AWPVNVGPLN PHLYTPNQMF AQSMVYEPLV KYQADGSVIP WLAKSWTHSE DGKTWTFTLR DDVKLSNGEP FDAEAAAENF RAVLDNRQRH AWLELANQIV DVKALSKTEL QITLKSAYYP FLQELALPRP FRFIAPSQFK NHETMNGIKA PIGTGPWILQ ESKLNQYDVF VRNENYWGEK PAIKKITFNV IPDPTTRAVA FETGDIDLLY GNEGLLPLDT FARFSQNPAY HTQLSQPIET VMLALNTAKT PTNELAVREA LNYAVNKKSL IDNALYGTQQ VADTLFAPSV PYANLGLKPR QYDPQKAKAL LEKAGWTLPA GKDIREKNGQ PLRIELSFIG TDALSKSMAE IIQADMRQIG ADVSLIGEEE SSIYARQRDG RFGMIFHRTW GAPYDPHAFL SSMRVPSHAD FQAQQGLADK PLIDKEIGEV LATHDETQRQ ALYRDILTRL HDEAVYLPIS YISMMVVSKP ELGNIPYAPI ATEIPFEQIK PVKP
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