Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E3843 |
Symbol | nikC |
ID | 6272226 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | - |
Start bp | 3568923 |
End bp | 3569756 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641727699 |
Product | nickel transporter permease NikC |
Protein accession | YP_001882134 |
Protein GI | 187733492 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | [TIGR02790] nickel ABC transporter, permease subunit NikC |
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Plasmid Coverage information |
Num covering plasmid clones | 43 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAACTTTT TCCTCTCTTC CCGCTGGTCG GTACGCCTGG CGCTGATCAT TATCGCCCTG CTGGCGCTGA TTGCGCTCAC CAGCCAGTGG TGGCTGCCGT ATGACCCCCA GGCGATTGAT TTGCCGTCGC GCCTGCTTTC GCCGGATGCG CAGCACTGGC TGGGCACCGA TCACTTAGGT CGCGATATTT TCTCGCGGCT GATGGCAGCG ACCCGCGTGT CGCTCGGTTC GGTAATGGCC TGCCTGCTGC TGGTGCTGAC ATTAGGGCTG GTTATTGGCG GCAGCGCCGG GTTGATTGGC GGGCGCGTTG ATCAGGCCAC CATGCGCGTC GCCGATATGT TTATGACCTT CCCGACCTCG ATTCTGTCGT TCTTTATGGT TGGCGTGCTC GGCACCGGGC TGACCAACGT AATTATCGCC ATCGCCCTGT CGCACTGGGC GTGGTATGCA CGCATGGTGC GCAGCCTGGT GATTTCACTA CGCCAACGCG AGTTTGTGCT GGCGTCACGG CTTTCCGGTG CGGGCCATGT GCGAGTGTTT GTCGATCATC TGGCAGGCGC GGTGATCCCT TCGCTGCTGG TGCTGGCAAC GCTGGATATC GGCCATATGA TGCTGCACGT CTCGGGGATG TCTTTCCTTG GCCTCGGTGT GACCGCGCCG ACCGCCGAAT GGGGCGTGAT GATTAACGAC GCGCGCCAGT ATATCTGGAC CCAGCCGCTG CAAATGTTCT GGCCGGGGCT GGCGCTGTTT ATCAGCGTGA TGGCCTTTAA CCTGGTGGGT GACGCACTGC GCGATCATCT GGACCCTCAT CTGGTGACGG AGCACGCACA CTAA
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Protein sequence | MNFFLSSRWS VRLALIIIAL LALIALTSQW WLPYDPQAID LPSRLLSPDA QHWLGTDHLG RDIFSRLMAA TRVSLGSVMA CLLLVLTLGL VIGGSAGLIG GRVDQATMRV ADMFMTFPTS ILSFFMVGVL GTGLTNVIIA IALSHWAWYA RMVRSLVISL RQREFVLASR LSGAGHVRVF VDHLAGAVIP SLLVLATLDI GHMMLHVSGM SFLGLGVTAP TAEWGVMIND ARQYIWTQPL QMFWPGLALF ISVMAFNLVG DALRDHLDPH LVTEHAH
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