Gene SbBS512_E0591 details

Gene Information

• Locus tag: SbBS512_E0591
• ID: 6271890
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 564596
• End bp: 566473
• Gene Length: 1878 bp
• Protein Length: 625 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 641724795
• Product: peptidase, S54 (rhomboid) family
• Protein accession: YP_001879335
• Protein GI: 187731357
• COG category: [R] General function prediction only; [S] Function unknown
• COG ID: [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid); [COG3391] Uncharacterized conserved protein
• TIGRFAM ID: [TIGR02276] 40-residue YVTN family beta-propeller repeat

Plasmid Coverage information

• Num covering plasmid clones: 32
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGCAT CTTCGGTTAA GCCGTTAAAT GTTCAATTAC CCGCAATAAC CCTTATCCTT 
TTTGCACTCT GTATTGGGAT ATTTTGTTAT CTCGCACAAT GGATGAGTTA TGAAGAGGTC 
GATCAATCCG CACTTATCCA TCTCGGCGCA AACGTTGCGC CTCTTACTTT GTCGGGTGAA 
CCCTGGCGCT TATTGAGCAG TATCTTTCTG CACAGTAGTG TTTCTCATCT GCTGATGAAT 
ATGTTTGCAT TCCTGGTCGT GGGAGGCGTG GCGGAACAGA TTCTGGGGAA ATGGCGACTC 
CTGATTACCT GGTTATTCTC CGGCGTCTTT GGTGGGCTTA TCAGCGCCTG TTATGCGTTA 
CGCGATAGTG ATCAGATAGT CATCAGCGTT GGGGCATTCG GGGCAATTAT GGGAATAGCT 
GGCGCTGCGA TAGCAACACA GCTTGCTTCA GGTGCGGGCA CATACCATAA AAACCAGCGG 
CGAGTATTTT CTCTGTTGGG TATGGTGGCG CTGACACTGT TGTATGGTGC CCGGCAAACA 
GGAATAGATA ATGCTTGTCA CATTGGCGGC CTGATTGCGG GTGGCGCGTT GGGTTGGCTG 
AGCGCGCGTT TATCTGGGCA AAACCGACTC GTTACGGAAG GCGGGATTAT TGTTGCGGGC 
AGTCTTCTTC TGACCGGGGC TATCTGGCTT GCGCAGCAGC AGATGGATGA GTCAGTTTTA 
CAAGTCAGGC AAAGTCTGCG TGAAGCGTTT TATCCACAGG AGATTGAACA AGAGCGACGG 
CAAAAAAAGC AGCAGTTAGC GGAGGAACGC AACGCCCTCA AGGAAACATT ATCCGCTCCG 
GTAAGTCGTG AACAGGCCAG TGGTGATTTG CTCGCTGAGA TTGCCGATAT CCATGATATG 
GCGATCAGTC GGGATGGTAA TATGTTGTAT GCCGCAATTG AAAACACGAA CAGCATTGTT 
GTTTTCGACC TCGGACAAAA GAAAATCCTG CATACCTTTA CAGCGCCCAT AGCGAAAGAA 
AAGTCAGTCA AACATTGTGG TGGCTGTAAA GATCAGGGCG TCAGATCGCT GGCATTAAGC 
CCGGATGAAA AGTTGATTTA TGCGACTTCA TTTGAAGCGA ATGCGTTATC GGTCATTAAC 
GTGGCGACAG GGGAGATTAT TCAGTCGATT ACCACCGGTG CACATCCTGA CAGCCTTATC 
CTCTCGCGTG ATGGCACAAA AGCCTGGGTG ATGAATCGCA CCAGTAATAG TGTGTCAGCG 
ATTGATCTGG TGACTTATCA GCATGTGGCG GATATCCCGC TGGAGAAATA CGACGGGGCG 
GGGACGAGCG GTAAACCAGG CGCCTGGGTT ATGGCACTTT CCCCGGATGA AAGAACATTA 
CTGGTTCCGG GAGCAGGCAG AGGTAACATC GTGCGGATCA ATACCATCAC GCATCAGAAA 
GAAGACTTTC CCGCAGGTGA TGCGCGTGGA ACGATATCGG CGATGCGTTT TCGACCTGAA 
AACGGCGAGG TTATTTTTGC AGATAGTCAG GGGATTTCAC GTATAAGCGT AGGGGCTCAA 
CAAGCCAGCA TTATGACGCA ATGGTGTAGC AGGAGCGTTT ATTCCGTTGA GGGTATTAGC 
CCGGACGGTC AATATTTAGC GTTGGTGTCA TATGGCCTGC AAGGTTATGT CATCCTGCTC 
AATATTAATG CCGGGCAGAT TATTGGCGTT TATCCTGCCA GCTACGTTAA TCACCTTCGT 
TTTTCAGCGG ATGGTAGAAA AATATTTGTC ATGGCGAAGA ACGGGTTGAT CCAAATGGAC 
AGGACGCGCT CGCTTGATCC GCAGGCAATT ATTCGTCATC CCCAATATGG CAATGTGGCT 
TGTATCCCTG AACCGTAA 

 

Protein sequence

MSASSVKPLN VQLPAITLIL FALCIGIFCY LAQWMSYEEV DQSALIHLGA NVAPLTLSGE 
PWRLLSSIFL HSSVSHLLMN MFAFLVVGGV AEQILGKWRL LITWLFSGVF GGLISACYAL 
RDSDQIVISV GAFGAIMGIA GAAIATQLAS GAGTYHKNQR RVFSLLGMVA LTLLYGARQT 
GIDNACHIGG LIAGGALGWL SARLSGQNRL VTEGGIIVAG SLLLTGAIWL AQQQMDESVL 
QVRQSLREAF YPQEIEQERR QKKQQLAEER NALKETLSAP VSREQASGDL LAEIADIHDM 
AISRDGNMLY AAIENTNSIV VFDLGQKKIL HTFTAPIAKE KSVKHCGGCK DQGVRSLALS 
PDEKLIYATS FEANALSVIN VATGEIIQSI TTGAHPDSLI LSRDGTKAWV MNRTSNSVSA 
IDLVTYQHVA DIPLEKYDGA GTSGKPGAWV MALSPDERTL LVPGAGRGNI VRINTITHQK 
EDFPAGDARG TISAMRFRPE NGEVIFADSQ GISRISVGAQ QASIMTQWCS RSVYSVEGIS 
PDGQYLALVS YGLQGYVILL NINAGQIIGV YPASYVNHLR FSADGRKIFV MAKNGLIQMD 
RTRSLDPQAI IRHPQYGNVA CIPEP