Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_3476 |
Symbol | |
ID | 5077625 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_009427 |
Strand | - |
Start bp | 78137 |
End bp | 79759 |
Gene Length | 1623 bp |
Protein Length | 540 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640481200 |
Product | sigma-54 dependent trancsriptional regulator |
Protein accession | YP_001165862 |
Protein GI | 146275702 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTCAGCCG ACCTCTTCAG CCAGCTCCAC TTCGACCATG CCCAAGGTCA TATCTGGCTG GCAGGCCGGC GCATGATGAT GATCCACGCC CGCGCCTTCG GACTCCTGCG CCACGAAGTG GTCGAGGCTC TTGGGCTCGA GAAGGCCCGT GGCCTGTTCA CGCGGCAGGG TTACAACAGC GGGGCGATGG ACGCCGAGAT CGCGAGCAAG GTCCGCCCCG GTGCCACCAT CGACGAGATG TTCGCGGTCG GTCCGGAGCT GCACATGCTC GAAGGCATGG TTCGGGCCGA ACCTGTCGAA GTCACCGTCG ACACCGGAAA GGGCGCGTTC GCTGCCGAAT ATATCTGGCG CGGGTCGACC GAGTGCGCTG CCCACGTCGA ACTGTTCGGG ACCGGCGCCT ATCCCGCGGG CTGGTCGCAG GCGGGCTATG CCAGCGGCTA TGCCAGCGTG TTCCTGGGCC GCCCGATCCT TTTTCGCGAG GTCGAATGCA TTGCCATGGG CCATGCCCAT TGTCGCGTCG TCGGACGTCC CGTCGACGAA TGGCGGGGCG GCGAGGACGA CTTGCGCTTC ATGCGCGGCG AACAGCTCAA CGAGATCAGC CGACTTGTCC CCGGAACGGC TGCCGTCGCC GGTGCCGAAG GTCGCCCCAT CGTCGGTGCT TCCGCCGGTT TCAACGTGGC GTTCGACATG CTTGGCCATG TTGCCGATAC CGATGCGGTC GTCCTTTTCC TTGGCGAAAG CGGAGTCGGC AAGGAAATCT TCGCGCGCAA TCTTCACGCC ATGGGCCGCC GAGCCGAAGG ACCGTTCATC GGCGTGAACT GCGCCGCAAT CCCCGAAAGC CTGATCGAGG CCGAACTGTT CGGCGTAGAG AAGGGCGCAT TCACCGGCGC CACCGCATCG CGTGCCGGCC GGTTCGAACG CGCCCGGGGC GGGACCTTGT TCCTCGACGA AATCGGCACG CTTTCCCTCG CCGCCCAGGG CAAGCTGCTG CGCGCCATCC AGGAAGGCGA GTACGAGCGC GTCGGCGGCA CGAAAGTCCA CAAGACCGAT GTCCGTCTCG TCGCAGCCAC CAACGTGGAT CTTCGCGCTG CGGTGGAGGC GGGCGAGTTT CGCGCCGACC TTTTCTACCG TCTCAACGTC TTTCCGATCC GCATTCCGCC GTTGCGCGAG CGCCGCGCCG ACCTGCCCCT GCTCATGGAA CATTTCCTCG CGCTCTACAG CAAGCGCTAC GCCAAGACGG TCACCGGCTT CGAGGAAAGT GCCGTTGCCG CCATGCTCGG CTATGAATGG CCCGGCAATA TCCGCGAACT GGAGAACGTG ATCGAGCGCG GCGTCATCAT GGCACGCGAC GGCGATCCGC TGCGGCTGCA TCACCTGTTC AGCGGCGGCG AAGTGCTTGG CCCGCGCGCG TTTCGCGTGG TCGATGGCGA TGTCGTGGCG TCCGCGTCCG GTGCCGATCC CGCCGCAGGC CTCGTCGATG CCGGCATCGA CCTGGAGACG ACCGAGCGCC GCATGATCGC ACGCGCACTG GAAAAGGCCG GGGGCAACAA GACCCGCGCG GCAGCGCTCC TCGGCCTTAC GCGCGCCCAG CTCCTTTATC GCCTCGGCCG CGAGGGCGCC TGA
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Protein sequence | MSADLFSQLH FDHAQGHIWL AGRRMMMIHA RAFGLLRHEV VEALGLEKAR GLFTRQGYNS GAMDAEIASK VRPGATIDEM FAVGPELHML EGMVRAEPVE VTVDTGKGAF AAEYIWRGST ECAAHVELFG TGAYPAGWSQ AGYASGYASV FLGRPILFRE VECIAMGHAH CRVVGRPVDE WRGGEDDLRF MRGEQLNEIS RLVPGTAAVA GAEGRPIVGA SAGFNVAFDM LGHVADTDAV VLFLGESGVG KEIFARNLHA MGRRAEGPFI GVNCAAIPES LIEAELFGVE KGAFTGATAS RAGRFERARG GTLFLDEIGT LSLAAQGKLL RAIQEGEYER VGGTKVHKTD VRLVAATNVD LRAAVEAGEF RADLFYRLNV FPIRIPPLRE RRADLPLLME HFLALYSKRY AKTVTGFEES AVAAMLGYEW PGNIRELENV IERGVIMARD GDPLRLHHLF SGGEVLGPRA FRVVDGDVVA SASGADPAAG LVDAGIDLET TERRMIARAL EKAGGNKTRA AALLGLTRAQ LLYRLGREGA
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