Gene Saro_3158 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_3158 
Symbol 
ID3918200 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand- 
Start bp3370779 
End bp3371468 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content67% 
IMG OID640445942 
Producthypothetical protein 
Protein accessionYP_498427 
Protein GI87201170 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0421] Spermidine synthase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCGCAC GCGAACTTCT CGGCACGGCC CGGGTCCCCG ATGGGGAGGA ATTGCGCCTT 
TATCGCCACG ACCGCGATTT CATGATCGTG CTCGGTCACA ACGAGCTGAT GAGCACGCGC 
CAGAACGGCT CGGAAATCGC GCTCGCCACG CAAAGTCTCG CCCGCATCGC CAAGGCGCGG 
CAGCCCGCCA TGCTGATCGG CGGGTACGGC ATGGGCTTCA CCTTGCGCGC CGCGCTCGAG 
AAGCTGCCCA CCGACGCGCA CGTGACCGTG GCTGAACTCG TGCCGGAAAT CATCGCCTGG 
GCGCGCGGCC CGATGAAGGA ACTGGAGGCC GGCTGCCTGG ACGACCCGCG CGTGCGCCTC 
GTCATGGCCG ATGTTGCCGA AGTGATCTCG GCCAATGCGC TGTCGGTGGG CGGCACGGGT 
TACGATGCGA TCCTGCTCGA TGTCGACAAT GGGCCGGACG GACTGGTCCG CCATGCCAAC 
AACCGCCTCT ATTCGATGCG CGGCCTGCGT ACCGCGATGG ATGCCCTGCG TCCCGGCGGC 
GTGCTGGCCA TCTGGTCCGC CGCGCGCGAT CCGAACTTCA CTCAGCGCCT CAAGGCAGCC 
GGCTTTGCCG TGGACGAAGT GGAAGTGCGC GCACGCACCA ACGGCAAGGG CGCCAAGCAC 
GTCATCTGGT TCGCTACCGA AGCGGTCTGA
 
Protein sequence
MIARELLGTA RVPDGEELRL YRHDRDFMIV LGHNELMSTR QNGSEIALAT QSLARIAKAR 
QPAMLIGGYG MGFTLRAALE KLPTDAHVTV AELVPEIIAW ARGPMKELEA GCLDDPRVRL 
VMADVAEVIS ANALSVGGTG YDAILLDVDN GPDGLVRHAN NRLYSMRGLR TAMDALRPGG 
VLAIWSAARD PNFTQRLKAA GFAVDEVEVR ARTNGKGAKH VIWFATEAV