Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_2580 |
Symbol | |
ID | 3916994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | + |
Start bp | 2784084 |
End bp | 2786504 |
Gene Length | 2421 bp |
Protein Length | 806 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640445338 |
Product | TonB-dependent receptor |
Protein accession | YP_497850 |
Protein GI | 87200593 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.531005 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTACCA AAGCCTTTGC GCGCGGCATT CTGCTGTCTA CCGCCGCCTC GTTCATCATC GCCAATCCGG CCTTTGCCCA GTCTGCCGGC GCCATGCAGG CGGAAGAGGC GAACACCGGC AACGAGATCG TCGTCACCGC GACCAAGCGC GCGCAGACGA TCCAGGAAGT GCCCTTCTCG GTCAACGCGC AGACCGCCGC CGATATCGAG CGGACCGGTG CGAACTCGAT CGAGGACATC TCGCGTTCGG TCGCTGGCCT TACCGTCCAG AACCTCGGGC CTGGCCAGAG CCAGGTTTCG GTGCGCGGCG TCTCCGCCGG CCAGATCGTC CGCGACCAGC CCGGCGTGAA GGAGCAGGTC GGCATCTATC TCGACGAATC CGTCACCTCG CTCTCGCTGT TCACGCCCGA CTTCGACCTG TTCGACCTCA ACCGCGTGGA AACCCTGCGC GGGCCGCAGG GCACCCTGTT CGGCTCGGGC TCGGTCGGCG GCACCGTGCG CTACATCACC AACCAGCCCA AACTGGGCGA GACCGAAGGA CAGGTCGCGG CTGACGTGAA CGTCCTCGAC GGCGGCGACG TGGGCTATTC CGCCAAGGGT GCGGTCAACG TGCCTCTGGG CGAAAATGCG GCCCTGCGCG TCGTCGGCTA TGGCGAGCAC TTCGGCGGCT TCATCGACGC GGTGGGACCC GCTGCAGGCA AGAACATCAA CGACGGCGAA CGCTATGGCG TGCGCGCGGC AGTGCTTTTC GAGCCCGTCG CCGGCCTCAA GATCACGCCG CGCATCGTCT ACCAGGACAT CAAGACCAAC GGCTTCAACC GCGCCGAGGT CTATCATCTC TATGCCAGCC CGCTGGCCGG CGCCGCGCCG CTGCCGGAGA ACACGCAGTA CCTGAAGCTG CGCGAACAGT TCCACGACAA GACCACGCTG GCCGACCTCA CCATCAGCGC GCCGATCGCC GATGGCGTCG ATGCCACCAG CGTCACCACC TACATCCATC GCGACATCCT CGTCAGCCGC GATGCCTCGG CACTCACCGG CTCGGTATCG GTCTCGCCCT TCATCCTCGA CCTGGGTGCG GATTCGGATC TCGCCAACCT GCCGTCGAAC CTCAGGGACT CGACCAAGCT CGAGACCTGG ACGCAGGAAC TGCGCCTTGC CTCGTCGGGC TCCGGACCAC TTCAGTGGGT GATCGGCGGC TTCTACAGCA ACATCGACCG CGTCTACGCA CAGCGCCTGC CCACGCCGGG TTATGACGCA ATTGTCGATG CCGCGCTCGG TGAAGGCGCC TCGGCGGGCG CGGCCAACGG CTTCCCGCTC AACTCGCCAT ACAACGCCGA CATTCCCTAC AAGATCGAAC AATTCGCCGT GTTCGGCGAG GCCAGTTACA AGGCGGGCGA TTTCAAGCTC ACCGCGGGCG GCCGCTACTA CGATTTCAAG GAATCGCGCG ACTTCATCTC CGGCGGCGTC TTCGCCAACG GCGACCGTCG CATCGGCGAC AAGACCAAAA GCAACGGCTT CAACCCGCGC TTCATCCTCA GCTACCAGCC GAGCCGCGAC CTTTCGCTCA ACCTCCAGGC CTCGAAGGGC TTCCGCCTCG GCGGCGTCAA CGATCCGCTT AACATCCCGC TCTGCTCGGG CGGCGAGGAC GGCACCGACG CGAAGACCTT CGGCAACCGT CCGACCTACA AGGACGAATC CCTGTGGAAC TACGAAGCGG GCGTAAAGCT CGCGCGCGGG CCGATCACCT TCAACGCGGC GGCGTTCTAC AACGACATCC GCAACCTGCA GGTAACGGCG GACGCGGGAA GCTGCTCGTC GCGCGTGGTC TTCAACGTCC CCAAGGCGCA CACGGCTGGC GTCGAAGTGG AACTTGGCGC GGAGCTGGCC GAAGGCTTCT CGCTCTCGGT CAACGGATCG GTGATCGAAT CCAAGTTCGA CAGCGACGTG CGTGACGCCA ACGGTGCGGT CATCGCCGGC ATCCGCGACG GCAATCGCCT GCCCACGGTG CCCAAGTTCC AGATGGCGGC GACCGCATCG TACAGCAGGG AAATCTCCGA CGGCATGGAC TTCGATGCCA ACGTCAGCTT CCAGCATGTC GGCAATCGCT ATACCCAGCC GTCCGACCAG GAAGCCGGCG CGGGCGTGTT CGGCAGCGCA ATCTACTACA ACCCGGCAAC GGGCGCGGCC GGAACCGGCA CGTACAACTT CGGCTCGCTC CAGCTGCCGA GCTACGAACT GGTCAACATC TCTGCCGGCC TCACCTGGCA GAACGGCCTT TCGGTGCTGG TCTACGCGAA CAACCTGTTC AACGAGACCC CGCTGCTCTC GCTCGACCGC GAACGCGGTG GCCGCGCGCG CATCGGCTAC AACGTGGGCA CGCCGCGCAA GATCGGCATG ACTGTCCGCA AGTCGTTCTG A
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Protein sequence | MATKAFARGI LLSTAASFII ANPAFAQSAG AMQAEEANTG NEIVVTATKR AQTIQEVPFS VNAQTAADIE RTGANSIEDI SRSVAGLTVQ NLGPGQSQVS VRGVSAGQIV RDQPGVKEQV GIYLDESVTS LSLFTPDFDL FDLNRVETLR GPQGTLFGSG SVGGTVRYIT NQPKLGETEG QVAADVNVLD GGDVGYSAKG AVNVPLGENA ALRVVGYGEH FGGFIDAVGP AAGKNINDGE RYGVRAAVLF EPVAGLKITP RIVYQDIKTN GFNRAEVYHL YASPLAGAAP LPENTQYLKL REQFHDKTTL ADLTISAPIA DGVDATSVTT YIHRDILVSR DASALTGSVS VSPFILDLGA DSDLANLPSN LRDSTKLETW TQELRLASSG SGPLQWVIGG FYSNIDRVYA QRLPTPGYDA IVDAALGEGA SAGAANGFPL NSPYNADIPY KIEQFAVFGE ASYKAGDFKL TAGGRYYDFK ESRDFISGGV FANGDRRIGD KTKSNGFNPR FILSYQPSRD LSLNLQASKG FRLGGVNDPL NIPLCSGGED GTDAKTFGNR PTYKDESLWN YEAGVKLARG PITFNAAAFY NDIRNLQVTA DAGSCSSRVV FNVPKAHTAG VEVELGAELA EGFSLSVNGS VIESKFDSDV RDANGAVIAG IRDGNRLPTV PKFQMAATAS YSREISDGMD FDANVSFQHV GNRYTQPSDQ EAGAGVFGSA IYYNPATGAA GTGTYNFGSL QLPSYELVNI SAGLTWQNGL SVLVYANNLF NETPLLSLDR ERGGRARIGY NVGTPRKIGM TVRKSF
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