| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_1724 |
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| Symbol | |
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| ID | 3916299 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | + |
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| Start bp | 1812584 |
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| End bp | 1814701 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640444465 |
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| Product | short chain dehydrogenase |
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| Protein accession | YP_496998 |
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| Protein GI | 87199741 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only
[S] Function unknown |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
[COG3347] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR02632] rhamnulose-1-phosphate aldolase/alcohol dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.616533 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCTC AGACCGAGAC CTTGATTGCC GCTGCCGCCA TTCCGTTCGC GGTTCCGACC
AGCCGTTGGG ACGATGCCGT CGCGGCAAAG CTCGGCCCGG CAGAACTTCT GCTCTATCGC
TCGAACCTGC TCGGTTCCGA TCTTACCGTC ACCAACTTCG GTGGCGGCAA TACGTCGGCC
AAGCTTGAAG AGATGGATCC GCTGACTGGT GAGCCGGTCG AAGTGCTGTG GGTCAAGGGT
TCGGGCGGTG ACATCGGCTC TATGAAGATC GACGGCTTTG CCACTCTTTA CCAGGCAAAG
CTGCTTGGCC TCGAGGCGCA CTATGCCGGG CCGCAGGACG ACGACAAGAT GGTCGGCTTC
CTGCCGCACT GCACGTTCAA CCTCAACTGT CGCGCGGCCA GCATTGATAC GCCGCTGCAC
TCGCTGCTGC CCTTCGCGCA TGTCGATCAC GTCCATCCCG ATGCGATCAT CGCGCTGGCC
GCTTCCTCGG GGGGCGAGGC CGCCACGAAG GAAATCTGGG GCGGCCGGAT CGGCTGGCTG
CCGTGGAAGC GTCCCGGCTA CACCCTTGGC GTGATGCTCC GCGATTTCGT CAAGGCTAAC
CCGGGCGTCG AAGGTGTCAT GCTTGCCGGC CATGGCATCA TCTGCTGGGC CGACAGCGCC
AAGGCCTGCT ATGAACATAC CGTTCGGCTG ATCGCGGACG CGGCCGGCTA TCTCAATGCC
CGGCTCGCCG AAAAGCCAGC GTTCGGAGGT CGGAAAGTGG CGCCGAACCC GGATCGGGCA
AAGATCGCCG CCGACCTCAT GCCTCGCCTG CGTGGCTTCA TGACCGGTGC GCGCAACAAG
CTTGGGCACT TCTCGGACGA TGCCGAGGCG CTGGAGTTCG TTGGCTCGGT GGACTTCGAG
CGTCTCGCCG CGCTTGGCAC CTCGTGCCCC GACCATTTCC TGCGCACCAA GATCGCGCCG
CTGACGCTCG ATCCCTCGCG GCTGCAAGAC GACGACTACC TCGCGCGGAA GATTGCCGGC
TATCGCGATC TCTATGCGGC CTATTATGAA CGCTGCAAGC GCCCGAACTC GCCGGCAATG
CGCGATTCCA ACCCTGTCGT CGTGCTCGTC CCGGGCGTCG GACGCATCAC GTTCGCCACC
GACAAGACCA CCGCGCGGCT CGCTGGCGAA TTCTACGGCA ACGCCATCAA CGTGATGCGC
GGGGCCGAAG CCATCGGCGA TTACATTGCG CTCGATGAGC AGGAAGCCTT CGACATCGAA
TACTGGCTGC TCGAAGAGGC CAAGCTCCAG CGCATGCCTG CGCCCCGGCC TCTGGTCGGC
AAGATCGCGC TGGTCACCGG CGGGGCAGGG GGCATCGGCG CGGCATCGGC CGCCCGCCTG
CTGCGCGAAG GCGCCTGCGT CGTGCTGGCC GATCGTGCCG CCGACGCGGT CGAGGACGTC
CGCGCCGGTT TCGCAAGGCA GTTCGGCAAC GACGTCGTGC GCGCGGCCGT CTGCGACGTG
ACCGACGAGG CGCAGGTCCA GGCTGCTTTC GACGTGGCCG CACGTGAATT TGGCGGGCTC
GACATTCTGG TCGCCAACGC CGGCATCGCA TCTTCTGCAC CGCTCGAGGA AACGACCGTC
GATCTGTGGA ACCGCAACTA CGACGTCCTC GCGCAGGGGT ATTTCCTGAC CTCCCGCTCC
GCCTGGCCGC TCATGAAGCG CATGAAGGAG CAGGGCGGCG CGTCTGTCGT GTTCATCGGT
TCCAAGAACG GCGTTGCCGC CGCTACGAAC GCCAGTGCCT ATGCTTCCGC GAAGGCTGCC
GCGAACCATC TCGCGCGGTG CCTCGCGCTT GAAGGCGCGC CGTTCGGCAT CCGCGTCAAT
ACCGTCAACC CCGATGCCGT CATCAAGGGC AGCAAGATCT GGGACGGCGA CTGGCGCAAG
GAACGCGCCG GGGCCCACGG CATCGACAGC GGCAAGGAAC TGGAAGAGCA CTACCGCCAG
CGCTCGATGC TCAAGCGCGA TGTTCTGCCC GAAGATATCG CGGAAGCAGT CTATTTCCTC
GCTTCGGACA TGTCGGCAAA ATCCACCGGC AACATGATCA ACGTTGATGC GGGGAACGCC
CAGGCCTTCA CTCGCTGA
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| Protein sequence | MNAQTETLIA AAAIPFAVPT SRWDDAVAAK LGPAELLLYR SNLLGSDLTV TNFGGGNTSA
KLEEMDPLTG EPVEVLWVKG SGGDIGSMKI DGFATLYQAK LLGLEAHYAG PQDDDKMVGF
LPHCTFNLNC RAASIDTPLH SLLPFAHVDH VHPDAIIALA ASSGGEAATK EIWGGRIGWL
PWKRPGYTLG VMLRDFVKAN PGVEGVMLAG HGIICWADSA KACYEHTVRL IADAAGYLNA
RLAEKPAFGG RKVAPNPDRA KIAADLMPRL RGFMTGARNK LGHFSDDAEA LEFVGSVDFE
RLAALGTSCP DHFLRTKIAP LTLDPSRLQD DDYLARKIAG YRDLYAAYYE RCKRPNSPAM
RDSNPVVVLV PGVGRITFAT DKTTARLAGE FYGNAINVMR GAEAIGDYIA LDEQEAFDIE
YWLLEEAKLQ RMPAPRPLVG KIALVTGGAG GIGAASAARL LREGACVVLA DRAADAVEDV
RAGFARQFGN DVVRAAVCDV TDEAQVQAAF DVAAREFGGL DILVANAGIA SSAPLEETTV
DLWNRNYDVL AQGYFLTSRS AWPLMKRMKE QGGASVVFIG SKNGVAAATN ASAYASAKAA
ANHLARCLAL EGAPFGIRVN TVNPDAVIKG SKIWDGDWRK ERAGAHGIDS GKELEEHYRQ
RSMLKRDVLP EDIAEAVYFL ASDMSAKSTG NMINVDAGNA QAFTR
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