Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_1402 |
Symbol | dapF |
ID | 3917857 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | - |
Start bp | 1444680 |
End bp | 1445507 |
Gene Length | 828 bp |
Protein Length | 275 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640444145 |
Product | diaminopimelate epimerase |
Protein accession | YP_496680 |
Protein GI | 87199423 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.0816431 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCTAAGT CGCGCGGCAT GCGCATTCCC TTCCGCAAGA TGCACGGGCT CGGCAACGAT TTCGTGGTGA TCGACGCCCG CGAGGCGGCC GTTTCCATGA CCGCCGCGCG TGCGGCGGCG CTCGCCGACC GCCGCACCGG CATCGGTTGC GACCAGCTGA TCGTTCTTGA ACCGTCGGAC GTGGCCGACG TGCGGATGCG CATCTTCAAC AACGACGGCA GCGAGGTCGA GGCCTGCGGC AACGCCAGCC GCGCCGTCGG CCTCCTCCTT GGCGGCACGC AATTCATTGA AACGCTTGGC GGACTGATCC GTTCGGAAGC ACGGCCCGAT GGCGTCTCTG TAGACATGGG CGCGCCCCGT CTGCGCTGGG ATGAAATCCC GGTCTCCTAT GCGATGGACA CGCTGGAAAT GCCGGTCGGC TGGGAGGACC TGGAGAACCC GGTCGGAGTC AATGTCGGCA ACCCGCACGT GATCTTCTTC GTGGACGATG CGGACGCCGT CGATCTCGCC CGTCTCGGCC CGCTGATCGA GAACGATCCG CTTTTTCCCG AGAGAATCAA CGTCAATGTC GCCAGCGTGG TTGGCCCCGA CCATCTCAAG CTGCGCGTGT GGGAACGCGG TGCCGGTCTT ACCCGGGCCT GCGGAACCGG CGCCTGCGCG ACGGCGGTCG CCGCGATCCG CCGCAAGCTG ACGGGCCGCA AGGTCCGGAT CGACCTGCCC GGCGGCCCGC TCACCATCAC CTGGCCTGAA GGCGGGACCA TCGATATGAC CGGGCCTGCG ACGCTGAGCT TCGAAGGCGC GTTCGAGGAC TCAGACTTCC CGGCATGA
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Protein sequence | MPKSRGMRIP FRKMHGLGND FVVIDAREAA VSMTAARAAA LADRRTGIGC DQLIVLEPSD VADVRMRIFN NDGSEVEACG NASRAVGLLL GGTQFIETLG GLIRSEARPD GVSVDMGAPR LRWDEIPVSY AMDTLEMPVG WEDLENPVGV NVGNPHVIFF VDDADAVDLA RLGPLIENDP LFPERINVNV ASVVGPDHLK LRVWERGAGL TRACGTGACA TAVAAIRRKL TGRKVRIDLP GGPLTITWPE GGTIDMTGPA TLSFEGAFED SDFPA
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