Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Saro_0787 |
Symbol | |
ID | 3915840 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Novosphingobium aromaticivorans DSM 12444 |
Kingdom | Bacteria |
Replicon accession | NC_007794 |
Strand | + |
Start bp | 834388 |
End bp | 836754 |
Gene Length | 2367 bp |
Protein Length | 788 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640443517 |
Product | TonB-dependent receptor |
Protein accession | YP_496066 |
Protein GI | 87198809 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.114604 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACATCA CCAGGAAGAC CCGGCTCGTC CAGTCGGTAT CGGTTGCAGC CATTGCGCTG TTCTCGTCAG TACCCGCATT CGCCCAAGCC GCCGACGAAC CGGCGGCGGC TCCCGGCGAA ATCATCGTTA CCGCACAGCG CCGCAGCGAG AACGTGCTCA AGGTCCCGGT CAGCGTCACC GTGGTCAGCG CAGATCAACT GATCCAGCGC GGCGCCAATG ACCTCACTGC TGTGACCAAG CTCGCGCCGA GCCTTCAGGT GGCGCAGGAC AACACCTTCT CGGTGCGCGG CGTCGGCACG GCAACTTTTG CCAACACCGT TGAAGCCAGC GTCTCGCAGG TCGTGGACGA TGTGGTTCTG GGCAACCGCG AATATGCGGC CAACGCGTTC TACGACGTGG CGCGCGTCGA AGTCCTGAAC GGGCCGCAGG GCCTGCTGTT CGGCAAGAAC GCCTCTGCGG GTCTGGTCAA CATCACCACC AACAAGCCCA AGCTTGGCGA GCTGTCCTTC AGCGCCGATG GCGAGCTGGT GCAGCGTGCC CGTCCCGGCG ACGATGGCAC CGGCTACCAG ATCCGCTCGA CCGTCAACGC ACCGCTGGGC GACAAGGCTG CGCTGCGGCT CAACGCGATC TACAGCGATC AGGACCCGAT TACCGTTTCC AGGGTCAACC CCGCGATGCG CAACGACCTC GGCCTCACCA ACCTCGGCCT GCGCGCCAAG CTGCTGTTCG AACCGACCGA CAGCCTCTCG GTCTACTTGA TCGGCGACTA CAATCGCCAG CGCGGCATCA CCGGCCGTTA CGACATCACC TTCCGCCAGT TCGGCCCCGG CAGCCAGTAC CCCGCCTATG GCCTTGCTGC TGGTCCGGAG AACTTCAACT TCGCCGCAGA AGCGCCCAAT TACCGCGACA GCGATACCGG CGGTCTTCAG GCCAATGTCA GCCTGAAGCT CGGCAACGGC ATGGAGCTGA CCAGCATCAC CGCGTGGAAG CAGGCCAAGA CCGACTTCCA GTTCGACTCC GACGAAACGG CAATCAACTT CTTCAGCTAC AACAGCGCTG ACCAGAAGTA CGACCAGTAC TCGCAGGAAC TGCGCCTTGC GCTGCCGACC GGCAATGCAC TGACCGGCCA GTTCGGCCTC TACTACTACC GCTCGGTCGG CAACAGCTCG GGCTTCCGTG GCGGCAACAA CGGTCTGCCC GATGTCGTCG CGATCGGCTT CCCGTTCTGC ATCGGCGCCA CCGTCACGCA GGGACCGCCG CCGGCCTGTG GCGTCAACAA CCGCTCGTTC CTCGGCCAGG ACTTCCAGTA TAGCCTCAAG AACGACAGCT ACGCCGCGTT CGGCCAGCTC GGCTACCAAC TGACCAATAC CTTGAAGGTC ACCGCCGGCG CTCGGCTGAC TTACGAAAAG GCGAAGATCA ACCTGCGCGA GAACTTCGGA AACTACTTCG TCACCCTCGG CATCAAGAAC AACGTCGCCA ACCAGGCCAC CGACGCCACG GACCTCAGCT ACAAGCTGGG CTTCGACTGG CAGGCAACGC CCGACCTGAT GGTCTATGGC TTCTACGGCG AAGGCTTCAA GGGCCCGGGC TTCTCGAACA CGGCTCCTGC TCCCGGTGCC GATCTGTCGG TTCGTCCGGA AATCTCGCGC GGCGGTGAGC TTGGCGTCAA GGGCAAGGCA CTCGACGGCG CGCTGACCTT CAGCCTCTCG GGCTTCTACA CGAAGTTCTA TGACCTCCAG GTCCAGGCCT TCGTGCAGGC GCTGCGCACC TTCGTTCTGG GCAACGCGGC CACGGCAACG ACCAAGGGCA TCGACTTCTC GTTCCAGGCC CGGCCCTTCG AAGGCCTGAC CTTGTCGGGT TCGGCATCCT ATGCCGATGC CACGTTCGAC GACTACCCGG GCGCCCAGTG CTACCCGACA CAGGCGACCG GTGGCTGCAA GGCGGATATC AACTCGTCGC TGCCAGGCTT CGTCGGCACA TTCAACGCCA AGGGCTATCA GTTGCCGCTG TCGTCCAAGT TCACGGCGAC ACTTGGCGCT GAGTATGCCG CTCCGATCAC GGACGGTCTA GAGGCGCAAT TCGGCGTTGG CTACTACCAT CGCTCGTCAC AGTCGGCCGG CATCGGTGCC CCGTTCACCA TCCCGACCTG GGACACGATC GACCTGCGCG CCGGGATCAA GGCCGAGAAC TGGAACATCA GCCTGTTCTG CAAGAACTGC ACGAACGAGA TCCGCCCGAT CTCGATCGGG TCTGACGGCG GCGATGCCAA CCCTGTTGGC GTCGCTCCGC CAGTGCTGAC GTTGAACCAG CGCTTCAGCT TTGAATCCGT CCGCACCATC GGCGTGCGTG CCGGCATCAA CTTCTGA
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Protein sequence | MNITRKTRLV QSVSVAAIAL FSSVPAFAQA ADEPAAAPGE IIVTAQRRSE NVLKVPVSVT VVSADQLIQR GANDLTAVTK LAPSLQVAQD NTFSVRGVGT ATFANTVEAS VSQVVDDVVL GNREYAANAF YDVARVEVLN GPQGLLFGKN ASAGLVNITT NKPKLGELSF SADGELVQRA RPGDDGTGYQ IRSTVNAPLG DKAALRLNAI YSDQDPITVS RVNPAMRNDL GLTNLGLRAK LLFEPTDSLS VYLIGDYNRQ RGITGRYDIT FRQFGPGSQY PAYGLAAGPE NFNFAAEAPN YRDSDTGGLQ ANVSLKLGNG MELTSITAWK QAKTDFQFDS DETAINFFSY NSADQKYDQY SQELRLALPT GNALTGQFGL YYYRSVGNSS GFRGGNNGLP DVVAIGFPFC IGATVTQGPP PACGVNNRSF LGQDFQYSLK NDSYAAFGQL GYQLTNTLKV TAGARLTYEK AKINLRENFG NYFVTLGIKN NVANQATDAT DLSYKLGFDW QATPDLMVYG FYGEGFKGPG FSNTAPAPGA DLSVRPEISR GGELGVKGKA LDGALTFSLS GFYTKFYDLQ VQAFVQALRT FVLGNAATAT TKGIDFSFQA RPFEGLTLSG SASYADATFD DYPGAQCYPT QATGGCKADI NSSLPGFVGT FNAKGYQLPL SSKFTATLGA EYAAPITDGL EAQFGVGYYH RSSQSAGIGA PFTIPTWDTI DLRAGIKAEN WNISLFCKNC TNEIRPISIG SDGGDANPVG VAPPVLTLNQ RFSFESVRTI GVRAGINF
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