Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sare_4284 |
Symbol | |
ID | 5706996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora arenicola CNS-205 |
Kingdom | Bacteria |
Replicon accession | NC_009953 |
Strand | - |
Start bp | 4859946 |
End bp | 4860776 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 75% |
IMG OID | 641273703 |
Product | tRNA pseudouridine synthase A |
Protein accession | YP_001539056 |
Protein GI | 159039803 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0101] Pseudouridylate synthase |
TIGRFAM ID | [TIGR00071] pseudouridylate synthase I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.143987 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.00623467 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGCAGGAGC GCACCCGGGT ACGGCTGGAC GTCTCATACG ACGGCACCGA CTTCTCCGGC TGGGCGGTTC AGCCGGACCG GCGTACGGTC GCCGGGGTCC TCGTGCAGGC GTTCGATCTG GTGCTCGGCT CCGACGCGGC GACCGGCCTG ACCGTGGCCG GCCGAACCGA CGCGGGCGTG CACGCCACCG GGCAGGTCTG CCACGTCGAC CTGCTGACCG AGGTGTGGCG GCGGCACGAG GGCACGCTGC TGCGGCGGCT GGCCCGGCTG CTCCCCGGCG ACGTACGGGT GCGGGCGGTG ACCGGGGTGC CGGGCGACTT CGACGCCCGC TTCTCGGCGA CCTTCCGGCG GTACGAGTAC CGGGTGACCG ATGCGCCCTG GGGCGCCGAG CCGTTGCGTC GCCACGACAC CCTGGCCTGG TCGAGCCGGC TCGACCAGGA CGCGTTGAAC GCCGCCGCCG ACGGGCTGGT GGGGGAGCAC GACTTCGCCG CGTACTGCCG GCGAAAGGAG AACGCGACGA CGTTGCGGGA GGTGACCCGG CTGGACTGGC GGCGTTCCGC GGACGGGGTG CTCGTGGCGA CCGTGCAGGC CGACGCCTTC TGCCAGGCGA TGGTGCGCAG CCTGGTCGGT GCGATGCTGG TCGTGGGGGA CGGCCGCCGA CCAGCCGGCT GGCCGGCCGG ACTGCTCGCC CGTCGCGAGC GCGCCAACGA GGTGAACGTC GCCCCGGCGC ACGGCTTGAC CCTGGTCGCG GTGGGCTACC CGGACGACCC GGCCGGATAC GCCGACCGGG CCACCCGGAC CCGCCGGTTG CGGGTGCCGC CGGATGCCTG A
|
Protein sequence | MQERTRVRLD VSYDGTDFSG WAVQPDRRTV AGVLVQAFDL VLGSDAATGL TVAGRTDAGV HATGQVCHVD LLTEVWRRHE GTLLRRLARL LPGDVRVRAV TGVPGDFDAR FSATFRRYEY RVTDAPWGAE PLRRHDTLAW SSRLDQDALN AAADGLVGEH DFAAYCRRKE NATTLREVTR LDWRRSADGV LVATVQADAF CQAMVRSLVG AMLVVGDGRR PAGWPAGLLA RRERANEVNV APAHGLTLVA VGYPDDPAGY ADRATRTRRL RVPPDA
|
| |