| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sare_3548 |
|---|
| Symbol | gcvT |
|---|
| ID | 5703929 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora arenicola CNS-205 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009953 |
|---|
| Strand | - |
|---|
| Start bp | 4092469 |
|---|
| End bp | 4093593 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641272975 |
|---|
| Product | glycine cleavage system aminomethyltransferase T |
|---|
| Protein accession | YP_001538341 |
|---|
| Protein GI | 159039088 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase) |
|---|
| TIGRFAM ID | [TIGR00528] glycine cleavage system T protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.033061 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG CGACCCCCGG CCCCGCCGAC ACCCGGCTGC GCCGCTCCCC GCTGCACGAC
CGGCATGTCG CCGCTGGCGC CAAGTTCGCC CTGTTCGGCG GGTGGGAGAT GCCGCTTGAG
TACGCCGGGG GCGGTGTGCT GAAGGAGCAC ACGGCGGTCC GCGGCGCGGT CGGCGTCTTC
GACGTGTCGC ACCTGGGTAA GACGCGGGTC ACCGGCCCTG GGGCGGCGGA GTTCGTCAAC
GCCTGCCTCA GCAACGACCT GACCCGGATC GGGCCGGGCC GGGCGCAATA CACGCTCTGC
TGCGACGACG CCACCGGTGG TGTGGTGGAT GACATCATCG CCTACCTGTA CGCCGACGAC
CACGTCTTCC TGGTCCCGAA CGCCGCGAAC ACCGCCGAGG TGGTGCGCCG CCTACGGGCC
GCCGCGCCAC CCTCGGTCAC GATCACCGAC GAGCACGAGG CGTACGCGAT CCTCGCGGTG
CAGGGCCCGC GCTCGGCGGA CCTGCTCGAC GCGCTGGGCG TGCCCACCGG GCACGACTAC
ATGAGCTTCG CGCCGGGCAC GGTGGCCGGG GCCAACCTGA CCGTGTGCCG CACCGGCTAC
ACCGGCGAGC TGGGCTACGA ACTGATTCTG CCCGCCGCCG GCGCCGTCCC GGTCTGGGAC
GCGCTCTTCG CCACCGCAAC AGAGCTGCGG GCGTGCGGCC TGGCCGCCCG GGACACGCTG
CGCACCGAGA TGGGGTACCC GCTGCACGGG CAGGACCTGT CGCCTGACAT CACCCCGGTG
CAGGCCCGGT CGGGCTGGGC GGTCGGCTGG AACAAACCCG CGTTCTGGGG GCGCGCGGCA
CTGCTCGCAG AGAAGTCCGC CGGTCCCCGG CGCAGGTTGC GTGGCCTGGT GGCAGTCGAT
CGGGCCATCC CGCGTCCCGG CATGGTCGTG CACCACCGTG ACACCCCGGT CGGCGCGATC
ACCAGCGGTA CCTTCAGTCC GACCCGGAAG CAGGGCATTG CCCTGGCCCT GATCGACACC
GAGCCCGGCC TGGACGACGG CACCGAGGTC GAGGTCGACA TCCGAGGGCG CCGTGCGTCG
ATGCGCCTGG TCCGACCCCC GTTCGTCGAC CCCTCGGTCC GGTAG
|
|---|
| Protein sequence | MTDATPGPAD TRLRRSPLHD RHVAAGAKFA LFGGWEMPLE YAGGGVLKEH TAVRGAVGVF
DVSHLGKTRV TGPGAAEFVN ACLSNDLTRI GPGRAQYTLC CDDATGGVVD DIIAYLYADD
HVFLVPNAAN TAEVVRRLRA AAPPSVTITD EHEAYAILAV QGPRSADLLD ALGVPTGHDY
MSFAPGTVAG ANLTVCRTGY TGELGYELIL PAAGAVPVWD ALFATATELR ACGLAARDTL
RTEMGYPLHG QDLSPDITPV QARSGWAVGW NKPAFWGRAA LLAEKSAGPR RRLRGLVAVD
RAIPRPGMVV HHRDTPVGAI TSGTFSPTRK QGIALALIDT EPGLDDGTEV EVDIRGRRAS
MRLVRPPFVD PSVR
|
|---|
| |