Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_3145 |
Symbol | |
ID | 4605392 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3731796 |
End bp | 3733430 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639782561 |
Product | mechanosensitive ion channel |
Protein accession | YP_929017 |
Protein GI | 119776277 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.187903 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTTACAT CTTACAGCAA CAGGATGTTG AATATGCGTC TGTTAATCCC TTTCCTCTTG GGCATGAGTC TGCTGGTTCC CACGGCAGCA CTGGCCGTCA GTGATGAGTT TCGCAGTAAT GTTGAGCAGC TCGAGCACAC AATAGCGCAG GATCTCAAGG CCCTGTCTCA GGCCAAAGGC GAACTGGTTG CCATCAGTGA GTATCGGATA AACCAAAAAA CGGCCGAATT GAGGCAGCTT ATCAACGCCG AAATTGAAGC CCCGAACACA GACACCGCCT ATCTGCAAAC GCTGGTGGAA AATCAGCTGA GTTTTATTCA GCAGACCCAA GCCTACCTGG GCAAAGACAT TCAAAGGCTT AAAAATGCAC TCGGCAGCAG CAATGATGCC GAGCTACTGC TGGCACTGTC CAACCGGGAA CGGGAGCGCG ACACCAACTT CAAAAAAGAA CTGCAAACCC TGGACTGGGG CAGCAAGCTG GGCATGGACA CACAGCCACG CCGCACCGAG CTGAAGCAGG CGCTGGCCGA ACGGGCTGAT CGCCTGGCAA GCCTTGTGAG TTACACCCAG GAACAACTCA AACAGGCAGT GGATGAAGCC CGCACCGCGG GTAAAGATGT CAGTGCCGAG CAAACCGCCA GGGTCAGTGA GCTCAAGGCC CGGCTGGAGC AAAACAGCGT TAGCCTGAGC ACAGTGGTCG GCTTGCTCGA AGAGCTGGGA GCCGATACCA CGGCGCTGAA ACAGGTGCTC TTTACCGTGT CGGGTGATAT TACCCAGGAT GTGCTGGATA TCGACCTGGT GGGCAGTCTG CTGGGTAAGT GGCTCAGCGT CGCCGAATCG CAGGCCATAG AAAATGGTCC ACGGATGCTG TTTAAGGTGT TTATCTTCCT GCTTATTCTC TTTGTCGCCA GTCTGGTTGC CAAACTGGTA AAGAGCGTGG TGAAAAAGGC CGTCAGTAAC TCCAAACTCA AATTCAGCAA GTTACTGCAG GATTTCTTTG TCTCTCTTTC CGCCAAGGGC GTGTACACCC TGGGGTTACT GATTGCCCTG TCGCAACTGG GTTTTGAACT TGGGCCCCTG CTGGCCGGTT TCGGTATTGC CGGTGTGATT ATCGGTTTTG CGCTGCAGGA CACGCTGTCG AACTTTGCCT CCGGCATGAT GATCCTGATT TACCGCCCCT ATGATGTGGG AGACCTAATC AGCGCGGCAG GCGTCACGGG CCGTGTCAGC CATATGAGCC TGGTATCGAC CACCATCAAA ACATTGGATA ATCAGCGCCT TATCATTCCA AACAATAAGA TTTGGGGTGA TACCATCAAC AACATCACCG CCGAGCACCA TCGCCGGGTC GATATGACCT TTGGTATCAG CTATGCCGAT AATGTCGAGC ATGCGGAAAA AATCCTGCTG GATATAGTCA ACAGCCATCC CAAGGTGCTG AAAGACCCCG GCGTGACTGT GCGCCTGCAT CTCCTGGGTG AATCGTCAGT GGACTTTGTG GTGCGCCCCT GGGTGCGGCC CGATGACTAC TGGGAAGTGT ATTGGGACGT GACCAAGGCG GTGAAACAGC GCTTCGACGC CGAAGGCATT ACCATTCCCT TCCCGCAGCG GGATGTGCAC TTCTATCGCG CTTGA
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Protein sequence | MLTSYSNRML NMRLLIPFLL GMSLLVPTAA LAVSDEFRSN VEQLEHTIAQ DLKALSQAKG ELVAISEYRI NQKTAELRQL INAEIEAPNT DTAYLQTLVE NQLSFIQQTQ AYLGKDIQRL KNALGSSNDA ELLLALSNRE RERDTNFKKE LQTLDWGSKL GMDTQPRRTE LKQALAERAD RLASLVSYTQ EQLKQAVDEA RTAGKDVSAE QTARVSELKA RLEQNSVSLS TVVGLLEELG ADTTALKQVL FTVSGDITQD VLDIDLVGSL LGKWLSVAES QAIENGPRML FKVFIFLLIL FVASLVAKLV KSVVKKAVSN SKLKFSKLLQ DFFVSLSAKG VYTLGLLIAL SQLGFELGPL LAGFGIAGVI IGFALQDTLS NFASGMMILI YRPYDVGDLI SAAGVTGRVS HMSLVSTTIK TLDNQRLIIP NNKIWGDTIN NITAEHHRRV DMTFGISYAD NVEHAEKILL DIVNSHPKVL KDPGVTVRLH LLGESSVDFV VRPWVRPDDY WEVYWDVTKA VKQRFDAEGI TIPFPQRDVH FYRA
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