Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2731 |
Symbol | |
ID | 4604978 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 3265052 |
End bp | 3265831 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639782142 |
Product | putative diguanylate phosphodiesterase |
Protein accession | YP_928603 |
Protein GI | 119775863 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGACTTTC CTGAAGAAAT CAAACAGCAA ACCTGTGCCG ACTGCCTGAG CGGTGTCTCA CTTGGCTTTC GTATCCGCAT GGCATTTCAG CCCATCATCG ATTGGCAAAC CCGCAACATC TTCGCCTACG AGGCATTGGT GAGAGGGCCC GAAGGACAAG GCGCTGGCTG GGTGTTTGAG CACATCAACG ACACCAACAA GTACTATTTT GATCAGACAT GCAGAATCAC CGCCATCAAA ACCGCTGCGG AGCTTGGATG CGACACCTTT TTATCCATCA ACTTTTTGCC TAACGCCGTC TACAACCCGC AAACCTGCAT CAAGGCAACC ATAGAGGCAG CCCACCTTTA CAACTTCGAT TTGAAAAAAC TCATCTTTGA AGTGACTGAA GGGGAAAATA TTATCGACAA GGCGCACTTG CGGAACATTT TCCAAAGCTA TGCCAAATTC GGCTTTTTAA CTGCTATCGA TGACTATGGT GCGGGCTATA CCCACATTAG TTGGCTGTCA GAGCTGAAAC CCCATGTGCT CAAATTGGAC ATGTCGCTCA TCCGTGACAT AGACAAAGAC CCACTCAAAC AGGCACAAAT CAGGGAAATC AAAGCCCAGT GTGACCTGCA ATGCACTCAA CTTCTCGCTG AAGGCATTGA AACCCATGAA GAACTCAGCT GTCTGACCGC GATGGGTATT CGCTATTTAC AAGGGTATCT GTTCGCCCCG CCCACGCTTG AACACCTCAC CAAGGAAAGC GACATAGAAC TACTTCAGGC AATTGATTGA
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Protein sequence | MDFPEEIKQQ TCADCLSGVS LGFRIRMAFQ PIIDWQTRNI FAYEALVRGP EGQGAGWVFE HINDTNKYYF DQTCRITAIK TAAELGCDTF LSINFLPNAV YNPQTCIKAT IEAAHLYNFD LKKLIFEVTE GENIIDKAHL RNIFQSYAKF GFLTAIDDYG AGYTHISWLS ELKPHVLKLD MSLIRDIDKD PLKQAQIREI KAQCDLQCTQ LLAEGIETHE ELSCLTAMGI RYLQGYLFAP PTLEHLTKES DIELLQAID
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