Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2631 |
Symbol | |
ID | 4604878 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 3150304 |
End bp | 3152244 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639782042 |
Product | TonB-dependent receptor domain-containing protein |
Protein accession | YP_928503 |
Protein GI | 119775763 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.221793 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTACCA AACCTTCTTT GATTTCATTG GCACTGGCCA CAAGCCTGCT GTCATCTTTC GCCTCAGCAC AGAGCAGTGT GGATGAACAT CTGGTGGTCA TTGGCCGTCA GGCCGATACC CCCCTGAATA TTGCCGCGAA TGTTGCTGTG ATTACCGCAG AAGACATTGC CTTGAGCGGT GCAACCAGCC TTGCCGGATT GCTGCGTGGT CAGAGTGCCA TCCAGATAAG CGACAGCGGC ACAGGGCCAG TCTTGGCCAT GCGCGGCTTT AGTGCTGGCC AGGCAGCCAA CAACACCCTG GTGCTGGTGG ATGGTCGCCG TCTCAACAAT ATTGATATAG CAGCGCCCAG CCTCAATGCC GTGTCCCTGA GTCAGATAGA ACGCATTGAA GTGCTCTCCG GCAGCGCCGG TGTGCTCTAT GGCGATCAGG CCGTTGGCGG CGTCATCAAT ATCATCACCA GGCGCAGTCA GGAAAACACC GGCGGCGCCT CGCTCACCGG TGGCAGTTTC GGCACCCTTG GCACAGCTAT GGATGTTTCG GCGGCGCTGA ATGAACGCTG GAATCTCTTC GTGGGTGGTA ACTTCGATAA GAGCGACAAC TATCGTGACC ATGCCGTCAG TGAGTCTGGC TCAGTGCTGG GCCGCATCGA ATACCGTGGC GATGGGCAGC GCTTCTTTGC TGAAGCTTCC TATTATGATG ACGACCGCGA ACTTGCAGGT TCACTCACCG CAGAGGAGCT TGCCGCCAAT CCCCGCCAGG CGAATGCTGC CAACAGCAGC GACTATCAGC ACAACCTGAC CAAGGCCGGC CGATTGGGAT ACGAGCACAG TCTGACCGAA CATTGGACCC TGGCTGCCGA CTTCGATGCC AGTGATACCC AAGTGAATTA CATCAGTTGG GGCGGCGCGG GCGAAACCGA GCGTCAACTC ATCAGCCTGA CTCCCAAAGC GATTGGCCGC TACCAGACAG AGGCGGGCGA ACTCAAGTTG GTAACAGGTG TGGACCTGTC TCGTGGCGAG TCAGAATTTA CTTCGGCTTA TATGGAACGC GGCAACACCC AAGAGCATTG GGCTGCTTTT GCTCAGGCAT CAGTACCTTT GACCAAGTCG CTGAGTTACG TGGTGGGTGG GCGTTATGCC GAAGTTCAGG ATGAAATTCG CGATCAGAGT ACTTTCCCTC TGGGTGGCAA GCTGGATAAC GACGCCCATG CGCTTGAGCT TGGATTAAAT TATCGCCCCG TGCAGGGACA CAGATTCTAC TTGCGCGCCG AAGATAACTT CCGTTTTGCC AAGGTAGATG AGCAGGCCTA CACCAGTCAG GCCAGTCTGA GACCCCAAAC AGGCCGAAGC TATGAAGCCG GCTGGGATTA TCAGGGTGCT CAGCAGGCAT TGCGCCTCAG TCTCTACCGT TTAAGCCTGG AAGATGAAAT TGTGTTTGAT CCCAGCGCCG ACACTCCGGT GGGGGGCTAT TTCCCGGGTG CCAATATCAA CGCCGATGAG TCGCGCCGTT ATGGTGCCAT GTTGGACTGG GACTGGCAGC TGAATGACAC CATCAGCCTG GGCATAGATT ACCAATACAC GGATGCTGAA TTTACTGCCG GGCTGAATGA TGGCAAGGCG TTGTCCTGGG TCGCCGAACA CAGTGGCCGT ATGTATGTGT CAGCTCAGTT TGCCGAGTAT TGGTCGGCCT ACGTAGATGC CGCCTACACG GGTGAGCGTT TTGTTGAAGG TGACAACGCC AATATGGGCG AGCAGATGGA TGCCTTTTGG CTGACCAATG CCGCAGTGAG TTTCCGTAAG GATGCCCTGA TTGCGACGCT GAGACTGGAT AACCTGTTTG ATGAAACGTA CGCGGCCTCA GGCTTCTACA GTGATTGGGG TAATGGATAT TATCCAGGCG AAGGTCGCAA AGTGAGCCTG ACACTGGGAC TGAAATACTG A
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Protein sequence | MGTKPSLISL ALATSLLSSF ASAQSSVDEH LVVIGRQADT PLNIAANVAV ITAEDIALSG ATSLAGLLRG QSAIQISDSG TGPVLAMRGF SAGQAANNTL VLVDGRRLNN IDIAAPSLNA VSLSQIERIE VLSGSAGVLY GDQAVGGVIN IITRRSQENT GGASLTGGSF GTLGTAMDVS AALNERWNLF VGGNFDKSDN YRDHAVSESG SVLGRIEYRG DGQRFFAEAS YYDDDRELAG SLTAEELAAN PRQANAANSS DYQHNLTKAG RLGYEHSLTE HWTLAADFDA SDTQVNYISW GGAGETERQL ISLTPKAIGR YQTEAGELKL VTGVDLSRGE SEFTSAYMER GNTQEHWAAF AQASVPLTKS LSYVVGGRYA EVQDEIRDQS TFPLGGKLDN DAHALELGLN YRPVQGHRFY LRAEDNFRFA KVDEQAYTSQ ASLRPQTGRS YEAGWDYQGA QQALRLSLYR LSLEDEIVFD PSADTPVGGY FPGANINADE SRRYGAMLDW DWQLNDTISL GIDYQYTDAE FTAGLNDGKA LSWVAEHSGR MYVSAQFAEY WSAYVDAAYT GERFVEGDNA NMGEQMDAFW LTNAAVSFRK DALIATLRLD NLFDETYAAS GFYSDWGNGY YPGEGRKVSL TLGLKY
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