| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2608 |
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| Symbol | |
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| ID | 4604855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 3122925 |
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| End bp | 3124499 |
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| Gene Length | 1575 bp |
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| Protein Length | 524 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 639782019 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_928480 |
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| Protein GI | 119775740 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0201696 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCTCA ATCATTTCAA TATGTTGTTG GGTACCTTGG TTACATTGGC CGCCTTTGTG
ACATCCTTTC TGATCCACGG CCTTTTCATC CGACCCGGTT TGATGAGTGA AGTGCGGGAT
CAGCAGTTGA TGGAGGTAAA AGCCCTTAAA GCGGGCATGA ATTTTTTCAG CCAGCCGTTG
TCCACCTTCA GTCATGATTA TGGTGTTTGG GATGAGATGG TGGACTTTAT CCAATCTCCG
GACCCCGAGT TTATCGAATC CAATCTCTAC GATGATGCCT TTGTTGCCGC TGGCATGGAT
GGCGCCTTTT TGTTTGATAC CAACGGTAAG CTGGTATGGG GATATCAAGG GGTGCCGGGA
CTGCTGCCGG ATAGCCTCGA CTCGCAGCCT GCATGGATTG GTCCTGTATT GCCTGACGCC
AAAACCGTGA GTACAGAGTC TGCCAGCACA AGGCGGGGCA TCATCCGTTA CGGTAGTCGG
GTAATGTTTT TCAGCAACAG CAATGTATTG CCAAGCAATG GCCATGGTAA GGTGATTGGC
AGTTTTATGG TGGTTCGCCT GATTAATGTC TCACTCACGG ATATGCTCAA GGAATTAACC
TTGGTTGAGT CCAGTCTGTC TCTTGCTAAT CCCAGGCTTC ATGGGCGCTT ACCGGTACTT
GAAGATCCCA TCCACATCGA TGAGGTCGCT CAAAGCCATC AATGGCTGGT GAAGGATGTA
TTTGGCGCGC CTGCGCTGGT GATGACAGTT CAGCATCACA AGAGTGATAT CCCCTCATTT
ATTTCCCGAG AATCCATTTT GATTTTTGCC ACTTTCATGG TGGTGGTACT TTTAGGATCC
GTGCCTCTTT CACTGTTTGT ATTGACTCCC CTTGGCAATA TCAATCGGGT GCTGGTGAAA
ATGACCACTC GGGGCCGACT CACCAAAATC AACCAATCCT TCTTTATCGA TGAGCTGCAC
AGGTTGACTG GCTCATTTAA CCAGTTGGCT GAAATGCTTG AGCGGCATCA AAACTATCTG
GAATCTTTAT CTTTCAAAGA CCCGCTTACC GGCATTGCCA ATCGCCGTGG CCTGGAGGCA
TTTGCCTCAA GGGCCCATCA GGAGTGGTTG GATGGTAAAG GGGCGCTCGG ATTTCTGATG
GTGGATGTGG ATGAGTTTAA GCAATATAAC GATACCCAGG GCCATACAGC GGGCGATAAA
GCCCTGATCT CGGTAGCCCA GACACTGCTG ATTGAGTGTC GGCGCAGGGG AGAGCTGGTC
ACCCGCTTTG GTGGAGAAGA GTTTTGTGTC GTGGTTCATG GTGACGACAC CCTGCAAATG
GAACGTTTGG CAGAGCGGAT GTTGCACCGG GTAAGGGAGC TTGCCATTAC CCATCCGTCC
GGCCAATTTG GTCACGTTAC TATCAGTGTC GGTGGCGTGC TCTTTGAGCA CTACGATCCC
CAATTTGCCG ATACATCCTG GCAGGATATG CTGGTCATGG CGGACAAGCA GTTGTATCTG
GCCAAATCCG AAGGCCGTAA TCGTGTGTGT GTGCGCGTTA TGCAAGCAGC CAGATTGATG
AAGACCGTAG GCTAA
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| Protein sequence | MRLNHFNMLL GTLVTLAAFV TSFLIHGLFI RPGLMSEVRD QQLMEVKALK AGMNFFSQPL
STFSHDYGVW DEMVDFIQSP DPEFIESNLY DDAFVAAGMD GAFLFDTNGK LVWGYQGVPG
LLPDSLDSQP AWIGPVLPDA KTVSTESAST RRGIIRYGSR VMFFSNSNVL PSNGHGKVIG
SFMVVRLINV SLTDMLKELT LVESSLSLAN PRLHGRLPVL EDPIHIDEVA QSHQWLVKDV
FGAPALVMTV QHHKSDIPSF ISRESILIFA TFMVVVLLGS VPLSLFVLTP LGNINRVLVK
MTTRGRLTKI NQSFFIDELH RLTGSFNQLA EMLERHQNYL ESLSFKDPLT GIANRRGLEA
FASRAHQEWL DGKGALGFLM VDVDEFKQYN DTQGHTAGDK ALISVAQTLL IECRRRGELV
TRFGGEEFCV VVHGDDTLQM ERLAERMLHR VRELAITHPS GQFGHVTISV GGVLFEHYDP
QFADTSWQDM LVMADKQLYL AKSEGRNRVC VRVMQAARLM KTVG
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