Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_2059 |
Symbol | |
ID | 4604309 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2493959 |
End bp | 2496184 |
Gene Length | 2226 bp |
Protein Length | 741 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639781436 |
Product | isocitrate dehydrogenase (NADP(+)) |
Protein accession | YP_927934 |
Protein GI | 119775194 |
COG category | [C] Energy production and conversion |
COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0165822 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.66664 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGATA ATTCCCCAAC GATTATTTAC ACTGAAACCG ATGAGGCGCC AGCACTCGCT ACCCTGTCCC TGCTGCCTAT CCTTCAGACA TTTGCCGAGC CAGCCGGCGT GAAGATCGAA ACCCGCGACA TCTCTCTGTC CGGTCGCGTT ATTGCTACTT TTCCTGAGAA GCTGACCGAT GCCCAGCGCA TTGGCGATCA CCTGGCTGAA CTGGGCGAAC TGGCCACCAA GCCAGAAGCC AACATCATCA AGCTGCCAAA CATCTCTGCT TCTATCCCAC AGCTCAAAGC CTGTATTAAA GAGCTGCAGG CTCAGGGTTA TGACATCCCT AACTATCCTG AAGAGCCAAA GACTGATGAA GAGAAGTCTA TCAAGGCCCG TTACGACAAG ATTAAAGGCA GTGCAGTAAA CCCTGTACTG CGTGAAGGTA ACTCCGACCG CCGTGCGCCG CTGTCAGTGA AAAACTATGC CCGCAAGAAC CCACACTCCA TGGGCAAGTG GGCAAGCGAC TCCAAGTCTC ACGTATCTCA TATGGAAGCC GGTGATTTTT ACGGCTCTGA GCAGTCTGTG ACATTGGCCG ATGCCGATAG CGTCAGCATA GTGCACACCA GCAAAGCCGG TGTGGAAACC GTTCTGAAAT CAGGTCTTAA GCTGCAAGCC GGTGAAATCA TCGACTCAGC TGTGATGAGC AAAAATGCCC TGGTTGCCTT CTTTGAGCGC GAAATCGAAG CCGCCAAGGC AGAAGATGTG CTGCTGTCGC TGCACCTGAA AGCCACCATG ATGAAGGTGT CTGACCCCAT CATGTTTGGT CACGCTGTTA AAGTGTTTTT CAAGCCACTG TTCGCCAAGC ATGCCGAAAC CTTCGAACGT CTGGGTGTGG ATGTAAACAA CGGTTTTGGT GACGTGGTTG CCAAAATCCA GTCTCTGCCG GAAGCCGAGC GCGCCGCCAT CGAAGCCGAT ATCCAGGCCG TGTACGCCGA GCGTCCTGCC ATGGCCATGG TGAACTCTGA CAAGGGCATC ACCAACCTGC ACGTACCAAG TGACATCATC ATCGATGCCT CCATGCCTGC GGCTATCCGC TCTTCAGGCC AGATGTGGGG CCCGGACGGC CAGCTTAAAG ACACCAAGTT TATGATCCCG GATCGCTGCT ATGCCGGTGT GTACGATGCC ACCATCAACT TCTGTAAAGC GCACGGCGCC TTCGATCCCC GCACCATGGG TACCATCCCT AACGTGGGCC TGATGGCGCA GAAAGCCGAA GAGTACGGCA GCCACGACAA AACCTTTGAA ATCGCCGAAG ACGGCGTGGT GACTGTGGTT AACGCGGCGG GTTCTGTGCT GATGAGCCAC ACTGTTGAAG CCGGTGACAT CTTCCGTATG TGTCAGGTGA AAGACGCGCC AATCCAGGAT TGGGTGAAGC TCGCCGTTCG TCGCGCCCGC TTGTCTGAGA CTCCAGCGGT GTTCTGGCTT GATAAAAACC GTGCCCACGA TGCTGAGCTG ATCAAGAAGG TGGAAGCCTA CCTGCCACAG CACGACACCT CAGGTCTGGA AATTCACATC ATGTCTCCGG TTGAAGCAAC CCAGTTCTCG CTGGCGCGCA TGAAAGATGG CAAAGACACC ATCTCAGTTA CCGGTAACGT ACTGCGTGAC TACCTGACTG ACCTGTTCCC CATCCTTGAA CTCGGTACCA GCGCCAAGAT GCTGTCGATC GTGCCTTTGA TGAATGGCGG CGGTCTGTTT GAAACCGGTG CCGGTGGCAG CGCGCCCAAG CACGTTGAGC AGGTTCAGAG CGAAAACTAC CTGCGTTGGG ATTCACTGGG TGAGTTCCTG GCACTGGCTG CATCTTTCGA ACACCTGGCC CAAACCGCCG GTGTTGCCAA GGCGCAGGTG CTGGCCGATA CCCTGGATAC TGCTATCGGT AAGTTCCTGG ACGAAAACAA GTCACCAGCC CGTCGTGTAG GTCAAATCGA CAACCGTGGC AGCCACTTCT ACCTGGCCAT GTACTGGGCT CAGGCACTGG CCGCGCAAAC TGCCGATGCC GAGCTTGCTG CTCACTTCGG TCAGTTGGCT GATAAGCTTG CTGCCAACGA AGAAACCATT TTGGCGGAGC TGATTGGTGT ACAGGGCCAC AGCGTGGATC TCGGCGGTTA CTATCGTCCT GATTTTGCCA AGGCAAGTGC AGTAATGCGC CCAAGCGCGA CCCTGAACGG CCTGATGAGC CACTGA
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Protein sequence | MKDNSPTIIY TETDEAPALA TLSLLPILQT FAEPAGVKIE TRDISLSGRV IATFPEKLTD AQRIGDHLAE LGELATKPEA NIIKLPNISA SIPQLKACIK ELQAQGYDIP NYPEEPKTDE EKSIKARYDK IKGSAVNPVL REGNSDRRAP LSVKNYARKN PHSMGKWASD SKSHVSHMEA GDFYGSEQSV TLADADSVSI VHTSKAGVET VLKSGLKLQA GEIIDSAVMS KNALVAFFER EIEAAKAEDV LLSLHLKATM MKVSDPIMFG HAVKVFFKPL FAKHAETFER LGVDVNNGFG DVVAKIQSLP EAERAAIEAD IQAVYAERPA MAMVNSDKGI TNLHVPSDII IDASMPAAIR SSGQMWGPDG QLKDTKFMIP DRCYAGVYDA TINFCKAHGA FDPRTMGTIP NVGLMAQKAE EYGSHDKTFE IAEDGVVTVV NAAGSVLMSH TVEAGDIFRM CQVKDAPIQD WVKLAVRRAR LSETPAVFWL DKNRAHDAEL IKKVEAYLPQ HDTSGLEIHI MSPVEATQFS LARMKDGKDT ISVTGNVLRD YLTDLFPILE LGTSAKMLSI VPLMNGGGLF ETGAGGSAPK HVEQVQSENY LRWDSLGEFL ALAASFEHLA QTAGVAKAQV LADTLDTAIG KFLDENKSPA RRVGQIDNRG SHFYLAMYWA QALAAQTADA ELAAHFGQLA DKLAANEETI LAELIGVQGH SVDLGGYYRP DFAKASAVMR PSATLNGLMS H
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