Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1838 |
Symbol | |
ID | 4604088 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 2237370 |
End bp | 2239889 |
Gene Length | 2520 bp |
Protein Length | 839 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639781214 |
Product | TonB-dependent receptor, putative |
Protein accession | YP_927713 |
Protein GI | 119774973 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000660835 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0669762 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAAAAA CCACGAGAAT CGCCTGGGCG GTCAATTGTG TTCTGTTGGC TACCAGTGCT TCTGCTGTCG TGTCCAGTCA GGCGTTTGCC GAAGAAGCTC AAGCCAAAGA CGTAGAGCGT ATCGCAGTAA CAGGTTCACG TATCCAGCGC CAGGATATGG AAACTGCTTC TCCTGTCACA GTGATCAGTG CCGATGCCAT TCGCGCTGAA GGCTTCACCT CTGTTGACCA AATGCTGCAG GCTCAAACCT CCATGGCGGG TGCCGCTGTG GGTTCAAGCA CCAACAACGG TGCAGATGGT GTAGCGCAGG TTGACCTGCG TGGTATGGGC GCTGAGCGTA CTCTGGTACT GCTGAACGGT CGCCGCATGG TGAACTCAGG TTCAGGCGCT GACAGCGCTG TGGATTTGAA CTCTATCCCG GTTGCCATGA TTGCCCGTGT AGAAATCCTG AAAGACGGTG CATCTGCAGT GTATGGCTCT GACGCCATCG CCGGTGTGGT GAACATCATC ACCAAGAAAG ATTTTGAAGG CTTCCAGTTC GACTTTAACG GCAGCGGCAC CGACAAGGGT GACGGCGAAA GTGGCGAACT GAGCATGCTC TACGGTTTCA ACACCGATAA CGGTGGCAAC TACACCTTTG GTGCGGCTTA CTCTGAGCGC CGTGGTGTTA TCCAGGCCGA TCGTGACTGG ACCGAGGCAG GTTACAGCTC ATTCATTCCT ACCGGCTCTC TGGAAGGTAT GGTGAAAGAC GCCAACGGTA ATTGGGTTGA CCGTAACACA GGTTATGACT TCACCCAGGA CAGCTGGTAT CAGACCCCAG CCAAGCGTTA CAGCCTGTTT GCCAACATGA CTCAGGAACT GGGTGACGAT CTGCTGCTGA CCGGTGACAT CCTGTATACC AAGCGTAAAT CTGATCAGCA AATGGCCGCT CAGCCAGCCG ACATCATGCT GGGCGTATGT GGTGAAGAGG GTATCGATGC TGCACGTTGC ATCACTCTGG ATGGCGACAT GATTGCTGCC GGTATCGCTC CTGATGACAC TGGCCGTGTA AACTACCGTC GCCGTACCAC CGATGTGGGT CCACGTATCT ACAATCAGGA CACCGACACT CTGCGCGCCT CTCTGGGCCT GCAAGGTTCT CTGGACATCA ACACAGGCAT GACCTGGGAC CTGTCTTACA CCTATGGTAA GAACAAGGCC GAGACCTGGG TTGAAAACTC TATCAATGCC GTGAAGATGG AAAACTCCGT CTATAACAAC CTGGACTCAT GGCTCAGCGG TCAGCCTCTG ACTCAGGACA TCATCAACGA CATCGGTTTC ACCGAGCGTA ACGATGGCGG TAACGAGCAG CACGTGGTTG CCGGCGTACT GAGCGGTGAA CTGTTTGATT TGAGTGCAGG TGCAGTTGGT TTTGCAATCG GTGCTGAATA CCGTTACGAC AGTGGCTACT ACAATCCTGA TCCTGTGATT GTGGCCGGTG AGGGTACTGC GGCTCAGCAA GACCCAACTG ATGGTAACTA CGATGTATTC TCCATCTATC AGGAAGTCAG CGTGCCTTTC ACCGAGAAAC TGACCGGTGA ATTCGCCCTG CGTTTCGATG ACTACTCTAC CTTCGGTAAA GCCTCGACCT GGAAAGTGGG TCTGACCTAT GAAGCCACTG ACGATCTGAT GCTGCGTACC GTAGCTGCTA CCGGTTTCCG TGCACCTAAC GTTGCCGAGC TGTTTGGTGG TAACACAGGT TCTTACGATT ATCTGGACGA TCCATGGGGT AACGAGCAAG ATCCTCAAAT TCTGGTGAAC TACACCTCAG ATCCTGATCT GAAGCCAGAA GAGTCTGAGT CTTACACTGC CGGTCTGGTG TACTCTCCAA GCTACATCGA CGGTCTGTCT CTGACCCTCG ATTACTGGCG TTTCCGTGTG ACCAACGCCA TTACCCGTCT GGATGCCCAG AAGGGTCTGG TTGACTGTCA TGCCGGTATT CTGAGCGCCT GTGAAACCTT CAAGATCACC GATGAAGGCG ATCTGTCGAA CTTCACCAAC CCGCTGACCA ACGTGGGTAG CCAGAACACC AGTGGTATCG ACTTCAACCT GGCCTACAAC TTCGAAGCTC TGAATCTGGA CTGGAAGATC AATAACGATC TGACCTACCT GCTGGAATTC GAACAGGACA ACGTAGCCTA CGAAGGCACC AGCGATGGTA ACTTCGGTGG TTATGCCAAG GTGCGCAACA ACTTCAGCAT CCAGGCCGGT CAGGCCGACT GGAGCCTGAT GTACTACAAC CGTTTCATCG GCGAAACCGA GTGGTTGGGT GACCGTGATG AAACTGTAGA CTCAGTGCTG TACCACAACG TGGTTGCCAC TTACTTCATC AACGACGGCG TGACCGTATC TCTGGGTGTG AAGAACCTCA CTGATGAAGA GCCATCCTAC GTGCCTAACG GCAGCGACGG CGGTACCATT CCTGAAGTAT TTGACACCAT CGGTCGTCAA ATCTACGGTG GTCTGACGAT GAAGTTCTGA
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Protein sequence | MLKTTRIAWA VNCVLLATSA SAVVSSQAFA EEAQAKDVER IAVTGSRIQR QDMETASPVT VISADAIRAE GFTSVDQMLQ AQTSMAGAAV GSSTNNGADG VAQVDLRGMG AERTLVLLNG RRMVNSGSGA DSAVDLNSIP VAMIARVEIL KDGASAVYGS DAIAGVVNII TKKDFEGFQF DFNGSGTDKG DGESGELSML YGFNTDNGGN YTFGAAYSER RGVIQADRDW TEAGYSSFIP TGSLEGMVKD ANGNWVDRNT GYDFTQDSWY QTPAKRYSLF ANMTQELGDD LLLTGDILYT KRKSDQQMAA QPADIMLGVC GEEGIDAARC ITLDGDMIAA GIAPDDTGRV NYRRRTTDVG PRIYNQDTDT LRASLGLQGS LDINTGMTWD LSYTYGKNKA ETWVENSINA VKMENSVYNN LDSWLSGQPL TQDIINDIGF TERNDGGNEQ HVVAGVLSGE LFDLSAGAVG FAIGAEYRYD SGYYNPDPVI VAGEGTAAQQ DPTDGNYDVF SIYQEVSVPF TEKLTGEFAL RFDDYSTFGK ASTWKVGLTY EATDDLMLRT VAATGFRAPN VAELFGGNTG SYDYLDDPWG NEQDPQILVN YTSDPDLKPE ESESYTAGLV YSPSYIDGLS LTLDYWRFRV TNAITRLDAQ KGLVDCHAGI LSACETFKIT DEGDLSNFTN PLTNVGSQNT SGIDFNLAYN FEALNLDWKI NNDLTYLLEF EQDNVAYEGT SDGNFGGYAK VRNNFSIQAG QADWSLMYYN RFIGETEWLG DRDETVDSVL YHNVVATYFI NDGVTVSLGV KNLTDEEPSY VPNGSDGGTI PEVFDTIGRQ IYGGLTMKF
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