Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1759 |
Symbol | |
ID | 4604009 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 2151993 |
End bp | 2153060 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639781123 |
Product | GGDEF domain-containing protein |
Protein accession | YP_927634 |
Protein GI | 119774894 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.538539 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0215764 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTCAACG AGCCACGGGC AGTTAAGGAT GAAGTATTTG CCATGACACT CGCAGCTCAC AAACCCAAAG AAAAAGATGA GTCGGCCGGG ATATTGAGAA AGGCCGTACC CCAAATGTCG GCACTCGGCA TTCCCGTAAC ACCCGACAAT TATGCCGTTT GGTATGCCTA CTATCAGGGG GCCGATTTGG CGCTTGTCAG GGCTATCAAT GGTTTGATGG AAAATCAGGT CTCTTTTTCT GCGGAGGTGT GCCGGGGACT CTACAGCAGT TTTATCCAGA ATAATGCACC CGAAGTATTG GAAAACGTGC ACCTGGAAAC CCAGTTGCTG ATCAATGGGC TACTCAGCAA AATCAGTCTG TTGACCTCAG GTTCTGAGAC ATTTCAGCTC GCCATAGAAA GTTTTGGCCA GCAATTGCGG CTTCCTCAGG AAGCGGAATC GCTGCATCGA TTGGTGGAGG GCGTGTTGGT TGAGGTGGAC AAGGTGGTAA GTGAGAACGC GGATATCCAC TCAAGTCTCA AGTCGATGGA TCAGGAACTC AATCATCTAC GAGCTGAAAT AACCGAGTTG TCGGTGATAT CCCTTACCGA TAAATTAACC GGGCTGAATA ATCGCCGTGC ATTTGAATCT CGTTTGGCGC AGGAGTTTTT ACCATCAACG CCAAAATGTT CGCTGTTGGT TATCGATATT GATCACTTTA AGCAGTTTAA CGATACATGG GGCCACAATG CCGGAGACAA GGTGTTGGTG TATGTGGCGC AGAATCTGAA ACAGGCCGTA AAGGGCGAGG ATTTGGTTGC CCGCTACGGA GGCGAAGAAT TTGTCATTGT GTTGAAGGAT ACCAGCGCTG AGGATGCAGC CAACATTGCG GAAAAGCTGC GCGACCGTAT CGCCAACAAA AAATTGACCT TGAAGAAAGA CAATTTGGAT TTGGGTAAGG TATCCGTATC CATCGGCGTC GCCAAGGCCT ATGCCAATGA AACCCCTGAA CAGTTTTTTG AGAGGGCGGA CGGCGCGCTT TACCGCGCCA AAGGCACTGG CCGGAACCGG GTTTGCCTCG CTGACTAG
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Protein sequence | MVNEPRAVKD EVFAMTLAAH KPKEKDESAG ILRKAVPQMS ALGIPVTPDN YAVWYAYYQG ADLALVRAIN GLMENQVSFS AEVCRGLYSS FIQNNAPEVL ENVHLETQLL INGLLSKISL LTSGSETFQL AIESFGQQLR LPQEAESLHR LVEGVLVEVD KVVSENADIH SSLKSMDQEL NHLRAEITEL SVISLTDKLT GLNNRRAFES RLAQEFLPST PKCSLLVIDI DHFKQFNDTW GHNAGDKVLV YVAQNLKQAV KGEDLVARYG GEEFVIVLKD TSAEDAANIA EKLRDRIANK KLTLKKDNLD LGKVSVSIGV AKAYANETPE QFFERADGAL YRAKGTGRNR VCLAD
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