| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1574 |
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| Symbol | |
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| ID | 4603826 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 1917664 |
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| End bp | 1918443 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639780930 |
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| Product | ABC transporter |
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| Protein accession | YP_927451 |
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| Protein GI | 119774711 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.00475707 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCCAA GACGACTGCT ATCAAGTCCA ATGCACTTGT TCAGGCCAAT GTGGCTGGTG
TTGATCCTGT CACTTGCCGG ATTTGGCGTT GCCAACGGGG TAAACGCCAC GGTCGTCAGG
CTCACATCAC TTAACTGGCC ACCTTATTCG GGGCAAGGCC TGCCATCCGA AGGTGCTGCT
GTGGCTGTGG CAAAGGCCGC TTTTGCCGCT ATGGGTTATC AACTTGAGGT GGACTTTTAT
CCGTGGAGTC GGGCGGTGAA ACTGGCCCAC CAAAGCAATA CACCCTACGT TGGGTATTTC
CCCGAATACT ACTTCGACAC AGTGCAATTT GTGTTTTCCC ATCCCATGGG CATGAGTCCA
TTGGGACTGC TTGAGCACAA GAGCCGTCCC ATCAGTTGGG TGTCGGTTAA GGATCTTCGC
AACTACCGGC TGGGGGTTGT ACAGGATTAT GTGAATACCG AAGAACTGGA CAGGGCCATC
GCCGATGACC TTCAGCCAGC TGAGCAGGTG ACATCAGATG AGTTCAACAT CAAAAAGGTC
GCGGCGGGTC GTATTGATGC GGCCGTGATA GATGTTTACG TCATGCGCTA TTTGCTTAAA
CAGAGCAGGC TACAGGGTGT GGCCGATAAA GTGCAAATTA ACAGCCAGTT ATTGGCAAAC
AAGAACCTTT ATATTGCCTT TAAGAATACG CCGGAAGGTC ATCGCTGGCA GGCCATTTTC
AATGAAGGCC TGCAGCGAAT TGATGCGGCA GAAATCATGG CAGATCACTT GCCGGAGTAA
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| Protein sequence | MLPRRLLSSP MHLFRPMWLV LILSLAGFGV ANGVNATVVR LTSLNWPPYS GQGLPSEGAA
VAVAKAAFAA MGYQLEVDFY PWSRAVKLAH QSNTPYVGYF PEYYFDTVQF VFSHPMGMSP
LGLLEHKSRP ISWVSVKDLR NYRLGVVQDY VNTEELDRAI ADDLQPAEQV TSDEFNIKKV
AAGRIDAAVI DVYVMRYLLK QSRLQGVADK VQINSQLLAN KNLYIAFKNT PEGHRWQAIF
NEGLQRIDAA EIMADHLPE
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