Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1388 |
Symbol | |
ID | 4603640 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1679815 |
End bp | 1680708 |
Gene Length | 894 bp |
Protein Length | 297 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639780738 |
Product | LysR family transcriptional regulator |
Protein accession | YP_927265 |
Protein GI | 119774525 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.837907 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0605197 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAACA CACTGGATCT GGACGGGCTA AGAGCTCTGG ATGCAATTGA TAAAAAAGGA AGTTTTGCTG CAGCTGCCGA ATCGCTTCAT AAGGTGCCTT CGGCCCTCAC CTACACAATT CAAAAGCTGG AACAGGAATT TGGCACCCCT TTGTTCGACA GGTCAAAACA AAGGGCCAGA TTAACGGCCG CGGGCAGACT GGTGCTTGAG CAAGGGCGGG AAATTTTGCA ATCCACCCAG CGCCTCGCCG ATGCAGTTGC CGCGCTGGAG TCAGGTTGGG AGCGAGAGCT GCGCATCGCA AGGGACACGG CCATGCCGCC GGGCCCACTG CTGGAGGCAT TAACCGCGTT TCTGGCCCTG TCGGTACCAG TGGACATCAG CCTTGCGGAA GAATCGCTCG GTGGCGGCTG GGATGCGCTG CACAGCCGCC GTGCCGATTT GGTGATTGGC GCCAACGGCG ACCTGCCTCG GGGGCTATTT GAAACCCATT GCATTGGTCA GCTCGAGTTT GTGTTTGCCC TGGCGCCCTT TCATCCGCTG GCAGAGGCTG AGGGCGTGCT GCAGCTGGAA CAGCTAATGC CCTTCCCTTC GGTGGTGGTG TCTGACAGCT CGCAGCTGTT ACCGGCCAGG AGCAGCGGCC TTTTCAGCAG TCGCCAGACC CTGAGAGTCG CGTCAATGGA AGCAAAAATT GAATTGCAGT GCCGCGGACT GGGCACCGGC TTTATTCCGC GCCATCTGGC GGCACCGCTT ATTGCCAGCG ACGCGCTGGT GGAAAAAGCC TGCGCCCTGC CGAGGCCAAG CCAGCCGGTG TTTCTGGCCT GGCATAAAGA GCATCAGGGC AAGGCATTAG CCTGGTTTGT GGCACATTTA TGTAAGGCCG ATTGGGGTAT ATAA
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Protein sequence | MANTLDLDGL RALDAIDKKG SFAAAAESLH KVPSALTYTI QKLEQEFGTP LFDRSKQRAR LTAAGRLVLE QGREILQSTQ RLADAVAALE SGWERELRIA RDTAMPPGPL LEALTAFLAL SVPVDISLAE ESLGGGWDAL HSRRADLVIG ANGDLPRGLF ETHCIGQLEF VFALAPFHPL AEAEGVLQLE QLMPFPSVVV SDSSQLLPAR SSGLFSSRQT LRVASMEAKI ELQCRGLGTG FIPRHLAAPL IASDALVEKA CALPRPSQPV FLAWHKEHQG KALAWFVAHL CKADWGI
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