Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1233 |
Symbol | |
ID | 4603485 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1517353 |
End bp | 1518243 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780583 |
Product | peptide ABC transporter, permease protein |
Protein accession | YP_927110 |
Protein GI | 119774370 |
COG category | [V] Defense mechanisms |
COG ID | [COG4171] ABC-type antimicrobial peptide transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCAAA TTAAGATTTA TCAGGAAGAC GACATTCCGT CTCCCATGAG GCGGCTATGG CAGGCGTTTG CATCCAACCC CTTCGCCCTG GCGGGGCTTT GGGTCATCAT CGGGCTGCTG TTTTTCACCC TGTTTGGCCC CTGGCTGGCG CCCTTCAGTC CGGAAGCACA AAACCCCAAA GCCTTGCTAT TGCCACCCTC CTGGGATCCC GCAGGTACGG TGGAACACTT TTTGGGTACC GATGACCTGG GGCGGGATAT ATTCAGCCGC ATCCTTCATG GTGTGCAGCT GACATTCGGC ATGTCGTTGG CCGTGGTGAT TACCGCGCTG CTGCTTGGCT TTGTCATAGG TGCCATTTCG GGCATGATGA AAGGGCTTAA ATCCAGTATT CTCGGTCACC TGCTGGACGC GCTCTTGTCC ATTCCATCAC TTTTAATGGC CATCCTGGTC GTCGCTGTAC TGGGGCCGGG GCTTGGCAAC GTATTTTGGG CTGTGGGTAT TGCCCTCACC CCACAATTTG TGCGCGCCAT TCATCAGGCC ATCCATGAAG AACTGCAAAA AGAATATGTC ACTGCTGCTC GCCTCGATGG CGCCAACAGT GCCCAGATTT TCTGGTACGT GATCATGCCG AACGTCTGGG AAGTGGTCAT TATTCAAACC ACGCTCGCCA TTTCCACCGC GATTCTGGAT ATAGCCGCTT TGGGCTTTCT TAATCTGGGA GCTCAGGCGC CCAGCCCCGA GTGGGGTGCC ATGGTATTTC AGGGCTTGGA TAACCTGCTT ACCGCCCCCT GGACCATGAC CATTCCCGGG CTCGCGATAC TCTTTACCGT GCTTGCCGTT AATTTGGTGG GCGATGGATT ACGCTCGGCC CTTGCGCCGA TAAAGAACTG A
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Protein sequence | MPQIKIYQED DIPSPMRRLW QAFASNPFAL AGLWVIIGLL FFTLFGPWLA PFSPEAQNPK ALLLPPSWDP AGTVEHFLGT DDLGRDIFSR ILHGVQLTFG MSLAVVITAL LLGFVIGAIS GMMKGLKSSI LGHLLDALLS IPSLLMAILV VAVLGPGLGN VFWAVGIALT PQFVRAIHQA IHEELQKEYV TAARLDGANS AQIFWYVIMP NVWEVVIIQT TLAISTAILD IAALGFLNLG AQAPSPEWGA MVFQGLDNLL TAPWTMTIPG LAILFTVLAV NLVGDGLRSA LAPIKN
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