| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1218 |
|---|
| Symbol | |
|---|
| ID | 4603470 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1499678 |
|---|
| End bp | 1500448 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639780565 |
|---|
| Product | tRNA-hydroxylase |
|---|
| Protein accession | YP_927095 |
|---|
| Protein GI | 119774355 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4445] Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0353203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATAGAGC AGTTGTTGGC GCCAGTCAGA GGATTTCTAG CCTGCGAAAC TCCTGATGCC
TGGATTGAGA AAGCCAAAGA CCCCGGTGTG TTACAGTCGA TTTTGGTTGA CCATTGCAAC
TGCGAGCTGA AAGCCGCACA AACTGCCCTG TTCTTAATCC GCAAATATGC GGTAGACCCT
GAGTACAGTT CGGCGCTGCT TGCCTGGGCA AAGCCTTATG AAGAATTTGT CTATCACAAA
GACAGGGATA TGAAGGCCTT CCTGGCCCGC ACCGGGAAAA AGAACGAACT GGCTACAGAG
CTTAAACCCA AATCAGGCGT TGCATTTGGC GACGAACTAA TCGCCAGAAT GGTTCGCTTG
ATTAAGGAAG AGTTTCATCA TTTCGAGCAG GTGCTTGAAA TCATGCATGC CAGAGATATT
CCCTATACCA ATATCAACGC AGGACGCTAT GCCAAGGGCA TGATGAGTCA TGTGCGTACC
AGTGAGCCTG CAACTCTTGT CGATAAGCTT ATCGTAGGTG CCTTTATCGA GGCCCGCTCC
TGTGAGCGTT TCGCCAAACT CGCCCCCTTT ATGGATGAAG AGCTTGAGCG ATTTTACGTG
TCGCTTTTAC GTTCAGAGGC CCGGCATTAT CAGGATTATT TGACCCTTGC CGAGATGATT
GCGGGGGAAA ATATAGACCA GCGCATCGCT TACTTCGCCG GGGTGGAAGC GGCGTTGATT
CAAGGTGCAG ATGACGAGTT TCGCTTTCAC AGCGGGGTGC CGAATACCTG A
|
|---|
| Protein sequence | MIEQLLAPVR GFLACETPDA WIEKAKDPGV LQSILVDHCN CELKAAQTAL FLIRKYAVDP
EYSSALLAWA KPYEEFVYHK DRDMKAFLAR TGKKNELATE LKPKSGVAFG DELIARMVRL
IKEEFHHFEQ VLEIMHARDI PYTNINAGRY AKGMMSHVRT SEPATLVDKL IVGAFIEARS
CERFAKLAPF MDEELERFYV SLLRSEARHY QDYLTLAEMI AGENIDQRIA YFAGVEAALI
QGADDEFRFH SGVPNT
|
|---|
| |