Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_1116 |
Symbol | |
ID | 4603368 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 1366840 |
End bp | 1367658 |
Gene Length | 819 bp |
Protein Length | 272 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 639780463 |
Product | transcriptional regulator, putative |
Protein accession | YP_926993 |
Protein GI | 119774253 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTGCGG ATAAATCAGC GCCTTCCCCA AAAACCGGCG CCAGACACCG CAATGCCACC ACCACGGTGG AGATGCGCCG TTTTATCCAG GAGTCGCCGC TGCCAGTGGC GGAACTTGCA CGTTTGCTCA ATATCACCCC GGCCACGGTG CGCAAGTGGA AAAATCGCGC CACTGTGGCC GACAGCTCCA ATCTGCCTCA CCACCTCAAC ACCACCCTGA CCCCGGTGCA GGAATACGTG GTCGTGGGGC TTAGATACCA ACTCAAGCTC ACACTGGATA AGCTGCTCGA AGTCACCCAG CAACATATCA ACCACGGGGT ATCCCGCTCC GGTCTTGCCC GTTGTCTCAA GCGCCACGGC GTCTCACGCC TGGGTGATAT CACCCCGGTT GATGCCCTGC CAGATAAACA CTTTGCCCTG TTACCCGTGT TTCGTGACAG CGGCACTGAA AACTATGCTC TGAACAGTCA TACCCTGGCC CAAACCCTGG CACTGCCCGC AGAAGACGAG CAAACCGTGG TGCAAGTGGA AGCCATGCAT GTGCCCATTG AACAGGACGG CTCCTATTCC GTGCTCATTG GCATGGCCAC AGCCCACGAC TGGGTGTATG TCGATATTTA TCCGGACACA GAGGCCGATG CCGACTTCAA GGCGGCCGAC CGCTATATGA GCCATGTGCT CAATCAGGGG CCATTCCAGC TTAAAAAGCT GCTCGCCCGC AATTATCAAA CCTTCCTGGC GCGCTTTCCC GATGTCCGCG GCGCCAAGAC CCGCAAAAAG ACGCCGGAAC GCCCGGCGCC AACAGGAGTT GCCCAATGA
|
Protein sequence | MSADKSAPSP KTGARHRNAT TTVEMRRFIQ ESPLPVAELA RLLNITPATV RKWKNRATVA DSSNLPHHLN TTLTPVQEYV VVGLRYQLKL TLDKLLEVTQ QHINHGVSRS GLARCLKRHG VSRLGDITPV DALPDKHFAL LPVFRDSGTE NYALNSHTLA QTLALPAEDE QTVVQVEAMH VPIEQDGSYS VLIGMATAHD WVYVDIYPDT EADADFKAAD RYMSHVLNQG PFQLKKLLAR NYQTFLARFP DVRGAKTRKK TPERPAPTGV AQ
|
| |