| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_1021 |
|---|
| Symbol | |
|---|
| ID | 4603273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 1234973 |
|---|
| End bp | 1235974 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 639780360 |
|---|
| Product | thiamine-phosphate kinase |
|---|
| Protein accession | YP_926898 |
|---|
| Protein GI | 119774158 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0611] Thiamine monophosphate kinase |
|---|
| TIGRFAM ID | [TIGR01379] thiamine-monophosphate kinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0674633 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTCGGC GGGCCGACAT CAAGGCCGAC GCCGGAATGA CAGTGAAAGA ATTCCAACTT
ATCGATCAGT ATTTCTGTGG CCGTGGCCCG GTGCGTCGGG ATGTTAAACA CGGTATTGGC
GACGACTGTG CCCTGGTTCA ACCGGCTGAG CACAAGCAGA TTGCCATCTC CTGTGACACC
CTGATAGAAG GGGTGCATTT CTTCAACGAT ATGCCTGCCT GGGCACTGGG TTACAAGGCG
CTTGCCGTCA ACCTGTCAGA CTTGGCCGCC ATGGGCGCCG AGCCAGCCTG GTTTACTCTT
GGCCTTAGTT TACCATCGGT GGATGAAAGC TGGCTCGCTG CCTTTAGCGA AGGCCTGTTT
GAGGCCGCCG AATATTATGG TATCGCGCTG ATTGGCGGCG ATACCACCCA AAGCCCTGTG
AAGGTCATAG CCGTTACCAT CAATGGTCAG GTGCCCGAAG GCAAGGCGCT CACACGCTAC
GGTGCCCGTA GCGGCGACTG GATTTACGTT ACTGGCTCGT TGGGAGACTC TGCGTTGGGG
CTGGATATCC TCAGAGGACG TCAGCAAAGT CGCCCGGAGC ACAGTGAGTA CCTGATTGAG
CGTCATTACC GACCTACACC AAGGGTACTT GCTGGCCAAT CTTTGCGAGG TCTGGCATCC
AGTGCCATCG ACCTGTCCGA TGGTTTGATG TCTGATCTTG GCCATGTGCT GAAGGCGTCC
AATGTGGGTG CCTACATTGA CGTGGAAAAG TTACCCCTGT CACAGGCGAT GAAGGACTCG
GTGCCGCTTG AGCAGGCGCT TGGGTATGCG CTCACCGGTG GAGAGGACTA CGAGCTGCTC
TTTACCGTGC CAGAGGCGCA ACGTGGTGCG CTGGAAATTG CGCTGGCCAA TGCCGGGGTG
AAGTTTTTCC GCATCGGGCA AATCACGGCG GGCAGCACCC TCAAGCTGAC CCATAACGGT
GAGCCTTTCA CACCGATGAA CAAAGGTTTT GAGCATTTCT GA
|
|---|
| Protein sequence | MGRRADIKAD AGMTVKEFQL IDQYFCGRGP VRRDVKHGIG DDCALVQPAE HKQIAISCDT
LIEGVHFFND MPAWALGYKA LAVNLSDLAA MGAEPAWFTL GLSLPSVDES WLAAFSEGLF
EAAEYYGIAL IGGDTTQSPV KVIAVTINGQ VPEGKALTRY GARSGDWIYV TGSLGDSALG
LDILRGRQQS RPEHSEYLIE RHYRPTPRVL AGQSLRGLAS SAIDLSDGLM SDLGHVLKAS
NVGAYIDVEK LPLSQAMKDS VPLEQALGYA LTGGEDYELL FTVPEAQRGA LEIALANAGV
KFFRIGQITA GSTLKLTHNG EPFTPMNKGF EHF
|
|---|
| |