Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0948 |
Symbol | |
ID | 4603200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1148200 |
End bp | 1149525 |
Gene Length | 1326 bp |
Protein Length | 441 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 639780283 |
Product | multiple antibiotic resistance (MarC)-related protein |
Protein accession | YP_926825 |
Protein GI | 119774085 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0738] Fucose permease |
TIGRFAM ID | [TIGR01272] glucose/galactose transporter |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000625246 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.50538 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACATGA CAGTTGCGAG CGAGGCTCAG GTGAGCCGCA GAAGCAGCGT ACTGCCGATG ACCATTATCG GCATACTCTT CTTCATCTTT GGATTTGTGA CCTGGCTGAA TGGTTCACTG ATCCCTTTTC TGAAGGTTAT CTGTGAGCTG AACGAGTTTC AGGCACTGTT TGTCACTTTT GCCTTCTACA TAGCCTACAC GGTAATGGCC TTGCCTATGT CCTCCATTCT ACGCCGTACC GGTTACCGTA ATGGTATGGC CATTGGTTTG GGCATCATGG TGGTGGGTAG CCTGGCTTTT ATTCCAGCCG CATACAGCGC CAACTTCCTG CTGTTTTTGG GTGCCCTGTT TATTCTGGGA ACGGGTTTGA CCATTCTGCA AACGGCATCC AACCCTTACG TGGTTCATAT CGGTCCCAAA GAAAGTGCGG CCATGCGGAT CTCCATCATG GGAATTATCA ACAAGCTCGC TGGTGTAGTG GTTCCGCTGC TGTTTACTGC GTTGGTGTTG TCGGGGCTTG AAAACTTCGA TGAAGCTCAC CTGTCGGCAT TGAGCGACGC AGACCGAGCG GTGCAGATAA CCGAGCTCTC AAGCCGCCTG GTGATGCCTT ATATCTATAT GGCCGTGGCG CTGCTTGCGC TGATCGCGCT GGTGAAGTTC TCTGGTCTAC CAGAACTTGA ATTTGAAGAA GCCGAATCCG CCGAAGGCGA GAAGGGCAGT ATCACCCAGT TTCCTCAGGT TATTCTGGGC GCCATAGCAC TCTTTGCTTA TGTGGGTATC GAGGTGATTG CCGGCGATAC CATTGGTCTG TACGGTCAGT CGCTTGGGGT GGCCAATTTC GCGTCGCTTA CTTCATACAC CATGGTATTT ATGGTGATTG GTTATGCCAT AGGTGTGCTC TGTATTCCGC GTTTTATCAG TCAGGAAAGG GCGTTGCTTG CCTCCGCCAT TGCTGGTGGT CTGTGTGTGC TTGGTGCTGT ATTTGGTTCT ACCGAAAGCA CCACACTGGC CTCAGCCCTC TGGGGATGGA TGGGGGTGCC TTTGGTCCCC AACTCGGTAG TTTTTGTTGC CATGATGGGC CTAGCCCACG CGCTGGTGTG GCCTGCCGTT TGGCCTTTGG CATTGGATGG CTTGGGCAAG TTTACCGCCC AGGGTTCGGC GTTGCTTATC ATGGGGATTT CCGGTGGCGC CATTTTGCCC CTGCTCTTTG GCAAGGTGGC CCATTTCAGC GGTGAGACTC AGCTGGGTTA CTGGGTAGGC CTGCCATGCT ATCTGTTCAT CCTCTTCTAT GCGGTGAAAG GACATAAGAT GCGTAGCTGG AAATAA
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Protein sequence | MNMTVASEAQ VSRRSSVLPM TIIGILFFIF GFVTWLNGSL IPFLKVICEL NEFQALFVTF AFYIAYTVMA LPMSSILRRT GYRNGMAIGL GIMVVGSLAF IPAAYSANFL LFLGALFILG TGLTILQTAS NPYVVHIGPK ESAAMRISIM GIINKLAGVV VPLLFTALVL SGLENFDEAH LSALSDADRA VQITELSSRL VMPYIYMAVA LLALIALVKF SGLPELEFEE AESAEGEKGS ITQFPQVILG AIALFAYVGI EVIAGDTIGL YGQSLGVANF ASLTSYTMVF MVIGYAIGVL CIPRFISQER ALLASAIAGG LCVLGAVFGS TESTTLASAL WGWMGVPLVP NSVVFVAMMG LAHALVWPAV WPLALDGLGK FTAQGSALLI MGISGGAILP LLFGKVAHFS GETQLGYWVG LPCYLFILFY AVKGHKMRSW K
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