Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0822 |
Symbol | |
ID | 4603074 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 1005145 |
End bp | 1006518 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780156 |
Product | fumarate hydratase |
Protein accession | YP_926699 |
Protein GI | 119773959 |
COG category | [C] Energy production and conversion |
COG ID | [COG0114] Fumarase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATAGCC GGATTGAAAC AGACAGCATG GGTGAGGTAT TGGTGCCCGC CGAGGCACTC TATGGCGCGC AAACTCAGCG GGCGCTGAAC AACTTTGCCA TTGGCGGCCA GCCGATGCCA AGGGCATTTA TTGAGACGCT GTTGCTGATA AAGGCCGCAG CAGCCCGTGC CAACAGCCAA CTGGGCGTGC TGGCAAGTGA TTGCGGCCAG GCTATCACCG AGGCGGCTTT ATCCTTACGC CAGGATAAGG CACTGATGCA ACACTTCCCC GTGGATGTGT TTCAAACCGG CTCTGGCACC AGCAGCAACA TGAATGCCAA TGAAGTCTTG GCTCGGCTCA CCTCAGAGAG TCTTGGTCGG GCTGTCAGTG CCAATGATGA GGTGAATCTT GGACAAAGCA GCAACGATGT TATTCCAAGT TGTATTCAAA TAGCTTCGGC AGGCGTGTTG ACCAAGACCC TGCTGCCAGC CCTTACGCAT CTTAAGTCCT GCATCAGAAC CAAGGCGGCG AGCGTGAAGG GAGTCGTAAA AACCGGTCGA ACCCATTTGA TGGATGCCAT GCCGGTGCGC TTGAGTCAGA GTTTGGAAAC CTGGGCCAGC CAGTTGGATG CCAGAGAGCT GCAATTACAG TCGCAGCTCA TATCCCTGTG GCAGTTACCC CAGGGAGGCA CTGCTGTGGG AACCGGCGTT AATGCTGCGC CGGGATTCCC ACAGGCGTTT TGCCATGAGC TGAATTTGCT TACGGGCCTC GCATTTCAGC CCGCCCCACA TCTGTTTACC GGCATTGCCA GCCAGGATAC CGCAGTGGCT TTGTCCGGTG AACTCAAGGC ACTGGCCGTT ACCTTAATGA AAATTGCCAA CGATTTGCGC TGGATGAACT CGGGGCCACT GGCAGGTTTG GGGGAAATCC GCTTGCCTGC GCTGCAGCCT GGTTCCTCGA TTATGCCCGG TAAGGTCAAT CCGGTAATCC CTGAAGCGGT TGCCATGGCC TGCGCCCAGG TGATAGGCAA TGATGCCTGC ATCACTGTGG CTGGACAGTC GGGTAATTTT GAGCTGAATG TGATGCTGCC AGTGATAGCA GATAACTTAC TCTCATCACT CAGGCTTTTG ACCAATGCCA TGATGGCGTT GGCTGATAAG GCCATAGACG GGTTTGAGGT ATGTGAAGGA CGTATGGCCA AAGAGCTTAG CCGCAATCCG ATTTTAGTGA CAGCACTGAA TCCGATTGTG GGTTACGCGA AAGCTGCCGA CATTGCCAAG AGAGCGTACG CTGAAGGGCG GCCAGTATTG GAGGTGGCGC TGGAGATGAC CGACATAGAC GCCGAAGAGT TGGCGAGGCT GCTTGACCCG GTTCGTTTGA CGGGGCAGAC ATAA
|
Protein sequence | MDSRIETDSM GEVLVPAEAL YGAQTQRALN NFAIGGQPMP RAFIETLLLI KAAAARANSQ LGVLASDCGQ AITEAALSLR QDKALMQHFP VDVFQTGSGT SSNMNANEVL ARLTSESLGR AVSANDEVNL GQSSNDVIPS CIQIASAGVL TKTLLPALTH LKSCIRTKAA SVKGVVKTGR THLMDAMPVR LSQSLETWAS QLDARELQLQ SQLISLWQLP QGGTAVGTGV NAAPGFPQAF CHELNLLTGL AFQPAPHLFT GIASQDTAVA LSGELKALAV TLMKIANDLR WMNSGPLAGL GEIRLPALQP GSSIMPGKVN PVIPEAVAMA CAQVIGNDAC ITVAGQSGNF ELNVMLPVIA DNLLSSLRLL TNAMMALADK AIDGFEVCEG RMAKELSRNP ILVTALNPIV GYAKAADIAK RAYAEGRPVL EVALEMTDID AEELARLLDP VRLTGQT
|
| |