Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0686 |
Symbol | |
ID | 4602939 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | + |
Start bp | 848184 |
End bp | 848972 |
Gene Length | 789 bp |
Protein Length | 262 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 639780021 |
Product | ROK family protein |
Protein accession | YP_926564 |
Protein GI | 119773824 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1940] Transcriptional regulator/sugar kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACAT TGACACTTGA TGTGGGGGGA ACCAACGGCC TGTTTGAACT CAGGCACGAA GGTCATACAG AACAATATAA ATTCCCCACC GGTGATGGTT TCTCTATCCG GGATTTAAAC GAGCAGATCC AGGCCTTTGA ACAGGACTTT GCGCTGGAAC ATTACCGCCT GGCCATGGCC GTCCCAGGCC TGGTACGGGA TAACCGTTTG GTTACCTGCA AATCGCTGCC GGGACTGACG GGGCTGCACC CTGCTCAAAT CCAGTGCAGT GGTGAACTCG CCTTTATCGC CAACGATATG GACGCGGGTA TCCAGGCCAT TGCCGAGCCT CGCCACGATT GCGAAGTGCT GGTGATGTGT GGTGCGGGTC TGGGTATGGC GATTGCCATG AATGGCCAGG TGTTCAGCGG TGCCAGCGGC TTTGCCGGTG AGCTGGGTCA CTGCCGTATC ATGACTGAGG GCGGTGAGTT CAGTCTGGAG CAATTGGCAT CTGCTGAAGC ACTGCGTGGT CGTAAACAGG TAGTGGGGGA CGACTTGGCT CAGGCGGGAC GTCATCTGGG CATGGGGTTG GCGTGGGTGG TTAACCTTTT CAATCCCAAT CGCATATACC TGGCTGGCAG CATGATGCAC AGTGCCGATT TTTACAAAGG TTGTATCGGC GCCCTCAGGG ATATGGCCTT GGGTGCGCCC ATGGCCAATT GTCAGGTTCA CAGAGTCGAT GATATGGAAA CTCTGGTGTG CCGCGGGCTG GCCAGCATGT TGGAAAAACA GCAGTCAGCA GCTGAGTGA
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Protein sequence | MQTLTLDVGG TNGLFELRHE GHTEQYKFPT GDGFSIRDLN EQIQAFEQDF ALEHYRLAMA VPGLVRDNRL VTCKSLPGLT GLHPAQIQCS GELAFIANDM DAGIQAIAEP RHDCEVLVMC GAGLGMAIAM NGQVFSGASG FAGELGHCRI MTEGGEFSLE QLASAEALRG RKQVVGDDLA QAGRHLGMGL AWVVNLFNPN RIYLAGSMMH SADFYKGCIG ALRDMALGAP MANCQVHRVD DMETLVCRGL ASMLEKQQSA AE
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