Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sama_0680 |
Symbol | |
ID | 4602933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella amazonensis SB2B |
Kingdom | Bacteria |
Replicon accession | NC_008700 |
Strand | - |
Start bp | 841258 |
End bp | 842772 |
Gene Length | 1515 bp |
Protein Length | 504 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 639780015 |
Product | XRE family transcriptional regulator |
Protein accession | YP_926558 |
Protein GI | 119773818 |
COG category | [K] Transcription |
COG ID | [COG1396] Predicted transcriptional regulators |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCAGTG AAAAAAGCCT GATGCGCCAA TCCCATTTTC TGGGCACCAA AATCAGAAAC TTACGGAAAC GCAATCACTT AACCATGGAA GATCTGTCTT CACGCTGTGT ACGTGTGGAT CCCGGTTCGG CGCCCTCCGT ATCTTACCTG TCGATGATTG AGCGGGGAAA ACGGGTGCCC AGTGCCGCCA TGCTGGAGGT GATTGCCAAG GTATTTGAGA AATCACCGGA CTGGTTTTTG GACGATGCGC CCGAAGAAGA CGCCATCACC CCGGACAAGG GACGCCGGGG TGGCATCAGC GGCATGGCGC TGGAGCCGGG CTTTTTGTTT TCCAAAGATA TTTTGCAGAT TGCCATTCCC GAAATGCTGT CGCAGACCGG GATCAGCGGC CGCCAGTTTG CCCATTTGCT GATCCGCGCC CATCAGGAGC ATCATCAAAA TCATTTCCCC GATCTGGAAC GTGCCGCAGA AGAAGTTGGT GATAAGCGGC TGAATCTCAG TGGCGACGAT CTGACGGCCA TCTGCAAACA GATGGGCATG AAAATTCGCT TCTTCAAAGA GCCACCTCAG GATCAGGTTG ACGCTAACGG CGTGTCCACC CATCAACTGG TCACCTCATT TTTCGAGCCA CCCTCCACCA TCTTTATCAA TGAAGCCCTG AAGAAAAATC CCGAGCGGCT CAAATACGAT TTGGCGGTAC ACATAGGCCA CTGCGTGCTG CACAACAAGG ACGGCCTGAA GAATGTACTG GCAGTGGGAC GTGGTATAGG CACAGGTGAG CAGGATGCCG ATATATCCTC CACCGTGAAT GCCCAGGATA TCTTAAGTGC CTGGCGCGAC TTTGAATCCA GCTTTTTTGC CGGCGCCCTG CTTTGTCCCA AGGTGCCTTT CCGACAGCTA TTGGAGCGGG GGGGCTATGA AATTGATACC CATAAAAAAA TCGGCGTGTC TGCCTCGGTG GCCATGCGCC GTATGACTGT GGTCTCTCCC TATCCCCACT GGCATTACTT CGATGCTTAT GCGCCGGGCA AGCTCAAGGC GGTATATCGG GGTAACGGCA TTCCCCTGCC CTGGGGCAAC ATGCGTCAGG TGCCGGACCC CTGCCAGCAC TGGGCAGTAT TTCGCATGAT AAGCGAGCCA TCCGATGGCA GCTCGGCGCA AATTTCCATT CTGGATGTGG GCGGCAGCCC ACGGATTTAC TGCTGTGAAT CCACCAAGGT GGTGGATTTG GCCGGAAACC ACCATGTGCT CTGCGCAGGG ATAGATTTGA ACCCCGCCAT CGATGCCCAG GGCACCGATG CCTTAAGTCT CGCCGAGGCA CTCAAAAGCC ACTGTGTAGC ATCAGGTGGT CAGGGGGAAA TTCCCACTGC CATAAAACGC CAGCTGATGA GCATTGCCCG GATTCTCAAT ATCAATTGGG TGGAGCGCGG TATCGACAAG GGTGCCAGAT TGATTTGCTC CCGGGGCAAT GTGTGCCCAC GCAAACCCAG CTGCTATGGG GGTTGCAAGG GGTAA
|
Protein sequence | MTSEKSLMRQ SHFLGTKIRN LRKRNHLTME DLSSRCVRVD PGSAPSVSYL SMIERGKRVP SAAMLEVIAK VFEKSPDWFL DDAPEEDAIT PDKGRRGGIS GMALEPGFLF SKDILQIAIP EMLSQTGISG RQFAHLLIRA HQEHHQNHFP DLERAAEEVG DKRLNLSGDD LTAICKQMGM KIRFFKEPPQ DQVDANGVST HQLVTSFFEP PSTIFINEAL KKNPERLKYD LAVHIGHCVL HNKDGLKNVL AVGRGIGTGE QDADISSTVN AQDILSAWRD FESSFFAGAL LCPKVPFRQL LERGGYEIDT HKKIGVSASV AMRRMTVVSP YPHWHYFDAY APGKLKAVYR GNGIPLPWGN MRQVPDPCQH WAVFRMISEP SDGSSAQISI LDVGGSPRIY CCESTKVVDL AGNHHVLCAG IDLNPAIDAQ GTDALSLAEA LKSHCVASGG QGEIPTAIKR QLMSIARILN INWVERGIDK GARLICSRGN VCPRKPSCYG GCKG
|
| |