| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0607 |
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| Symbol | |
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| ID | 4602860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 758871 |
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| End bp | 761060 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639779942 |
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| Product | putative transcriptional regulator, CadC |
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| Protein accession | YP_926485 |
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| Protein GI | 119773745 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.178679 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAATA ATAAAAAATA CCGCCTCGGC CCCTACATGG TTATCCCAGA GCGGTGTGTG
ATTGCCAAAA ACGGCTCTGA CACCAAACTC GAACTGCGGG TGATGCAGGT ATTGGTGTGT
CTGCTGGAGC GTGCCGGTCG TCCCGTCAGT CGCGACGAGC TTATCAGGGA AGTGTGGCGC
GGTGGTCAGG TATCCGACAA TGCCATCAAC CGGATTATTG CTCAGCTCAG AAGCGCCTTG
GGCGACGACG CCCGCAGTCA GCAGGTTATT CAAACCGTCC CCAAGGTCGG TTATTTGCTG
ATAGCAGAGG TGGAACCACT TGAAGGTCAG GTAATAACAC CTTCCGATTT GACACACTCT
TCAGAGGTCC CAAATGCAGC GGCTCCCGTG GCGCCGATAG ACATTGAAGA CAACCAGCAG
CGCAGTTCCT CAACAATGTC ACCAGACATT AAGCCCGTGC CTGCCCAGCC AAAGCCTGCC
CAGCTAAAGC CTGGCCGTCT CATCCTGGCG ACTTACGCAT TGGTGGGTGT ACTCCTGTCT
CTGTTGGCAT TCATCGTCTG GGATACTTTG ACCCAGAGTG ACAAGTCAAA AGCCGAACCC
GTGCAAGACA ACATAGCTTC ATTGTTGCCG TTAACCTCTC TGGAGGGGCA GGAGGTCGAT
CCGGTGTTAT CACCGGATGG CAAAAAGCTG GCATTTGCCT TTCGGGACCT TAAAGCGAAA
GAGTGGCGTG TTCTGTTACA GGACCTGACT ACGGGGCAAG TCTCTCTGGC TGACAACTCG
CCAACAGCCT ACAACCAGCG CTATCCGGCC TGGAGCGATG ATGGCGGCCA TTTGGCGTAC
TTGAACTTTG ATGGTAAAGG ACGCTGCGAA CTCATTCTGT TGGATTTGCT CACCCGCAAC
GCAAAAGTAG TCTCCCAATG TGACAAAGCC ACTCAATCGA GCGCTCTGGC CATAAGGGGG
CAGGAGCTCT ATTTCGTGGA CTCGGACGGC GTTGAAGATT TTAAAAAGAT TTATCAGGTC
AATCTGAATA CCTTAAAGAA AGAACAGCTC AGCCGCCCGC ACAGTATAGG TCGGGGTGAT
TATGGCCTCA GCCTATCGCC GGATAAGTCG CAAATGGCGG TGCTGAGAAA CTTAAGCTGG
TTTGATACTC AGTTGATGGT ATTTAACTTC AGTACCGGGG AATGGCGACA GGTGCTTAAG
GTGGGTTACC CATTAAAGAG CATAGCCTGG TCTGCCGATG GTAAGGGGTT GATCTATAGG
GCGGAAGAAG GCCAACTGCA CCGTTTCGAT TTAGACACCA AAGATCGCGT TCGACTGACC
AAGATACTGC AGGAAATCAA CTCACCTCGC TCAAACAGCA AGGGGCAAAC GGTAGCTGTC
GTCGGCGAGC TAATGGAAGA AGAACTGTGG CATTGGTCAG CGCCGGGTAA TACCAAACCC
GAGCCATGGG TATCATCCAG TCGCCGCGAT TATCGTGGTG CTATCAGTCC AGATGGCACC
TTGACGGCTT TCGTCTCCAA TCGAACCGGG TTGCCACAAA TATGGCTGAG GCAACTGAAA
GGTGAAGAAA TCAAACTCAC CCATTTTGAC CGGTTTTCAT TTATAGACGA GCTGATATTT
TCCCCGAATG GCAAATTGCT TGCTGGCACT ATTAATGGCG CAGCCTTCAC CTTGGATATT
GCCAAGTCGG CAATTCATTT TATTCCGGGC AGAACTTCGG TGAGAAATAT TTCATTTGGG
ATGAATGATG ATGAATTGGT GCTGTTTTCC TCTGAAGCTG GTAAGCGTCA ACTTCAACTG
GTGGATATGC GAACTGGAAA AACGCTCAAT CTGTTGGCCG AAAATGGTTT TTCCGGAAAA
TTTGATAGAG CCTCTGGCGA GTTTTTTTAT TCTAAAATGA ACAGTTCGGG AATATGGAGT
TTAACCCAGG GGGTGGAAAC ACAAGTCACC GATAAAGTCA CGCCCCTCTT TTCCGGTGGT
TGGCATGTGG CCCAAGGCAA AATCTGGTAC CTGAAAGGTG ATGAGGGAAC AACCAAACTC
ATGGAGCTGG ACGTCAATAA TGACAAAGAG TTTGCGCATC CAATACAAAT TACCAATGTA
TCTATGAACA CACTCTCAAT GACCAACAAC AACCAAGTGC TCTTGTCTGT GTTGGCCAAT
GCCAATACAG ATATATTTTT GGTGAATTAA
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| Protein sequence | MFNNKKYRLG PYMVIPERCV IAKNGSDTKL ELRVMQVLVC LLERAGRPVS RDELIREVWR
GGQVSDNAIN RIIAQLRSAL GDDARSQQVI QTVPKVGYLL IAEVEPLEGQ VITPSDLTHS
SEVPNAAAPV APIDIEDNQQ RSSSTMSPDI KPVPAQPKPA QLKPGRLILA TYALVGVLLS
LLAFIVWDTL TQSDKSKAEP VQDNIASLLP LTSLEGQEVD PVLSPDGKKL AFAFRDLKAK
EWRVLLQDLT TGQVSLADNS PTAYNQRYPA WSDDGGHLAY LNFDGKGRCE LILLDLLTRN
AKVVSQCDKA TQSSALAIRG QELYFVDSDG VEDFKKIYQV NLNTLKKEQL SRPHSIGRGD
YGLSLSPDKS QMAVLRNLSW FDTQLMVFNF STGEWRQVLK VGYPLKSIAW SADGKGLIYR
AEEGQLHRFD LDTKDRVRLT KILQEINSPR SNSKGQTVAV VGELMEEELW HWSAPGNTKP
EPWVSSSRRD YRGAISPDGT LTAFVSNRTG LPQIWLRQLK GEEIKLTHFD RFSFIDELIF
SPNGKLLAGT INGAAFTLDI AKSAIHFIPG RTSVRNISFG MNDDELVLFS SEAGKRQLQL
VDMRTGKTLN LLAENGFSGK FDRASGEFFY SKMNSSGIWS LTQGVETQVT DKVTPLFSGG
WHVAQGKIWY LKGDEGTTKL MELDVNNDKE FAHPIQITNV SMNTLSMTNN NQVLLSVLAN
ANTDIFLVN
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