| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0472 |
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| Symbol | |
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| ID | 4602727 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | + |
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| Start bp | 577837 |
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| End bp | 582384 |
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| Gene Length | 4548 bp |
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| Protein Length | 1515 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 639779808 |
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| Product | membrane protein |
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| Protein accession | YP_926352 |
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| Protein GI | 119773612 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3164] Predicted membrane protein |
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| TIGRFAM ID | [TIGR02099] conserved hypothetical protein TIGR02099 |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.50538 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAGCAT TCTGGCGTCC GGCCTCACTG GGCCGGATTT GTGGATTAAC GCTGGCAACC
CTACTGGTGC TGTTTGCACT GGGGGTCAGC CTCATCCGCA GCCTGCTGCC GCAACTGGAA
CAAGCCCGCG ACAGGGTTAC TGATTATCTG TGGGAAAACT ACCGCATTGA AGTCAAAGTC
AGCCGTCTGG CGGCGGAGTG GCAAGCCTTT GGACCGTCAT TGACGGTTGA AAACCTGATT
TTACCCCCCC AGGAAGGGTT GCCGCTTACC CTGATTATCA AACGCACCGA CATCAAGCTG
GACTTCTGGC AAACCCTGAT GAACCGCGAA CCCACGGTGG AACATGTGGC CTTCGAGGGG
GTGCAGATTG CGTTGGACCT TGACGCCATG GGGGGCTCTG GCCCGCAAGA GTCTGTGCCT
GTCAGCAACG ACACTACACG GGTAAAAGAG ACCACCCGGG TAATAGATTG GTTGTCACCC
TTGCTGCTGG AACAGCTACA GCAATTTGCC CTTACCGACG CCACTGTGCA GCTCAAGAGT
AAATACCACG ATTTCCGGCC CATCTACGTG GGCGATTTGC GCTGGCTGAA TCTGGACGGC
CGCCACCGGG CCGAAGGCTA TGTGTATCTG GACGACAGGG CATCTGTCTC CGAGCGTTTG
TCGCTGCAAA TCGATTTTAA AGGCGATGGA AGTCAGCCGG AAAGCATTCA CGGCCAGTTG
TATCTGGCCG CCCGGGCGCT GGATTTGGGT GAGTGGGCAG CGCGCCAGCC CAATCCCTTC
AACGAGGCCG AACCCTTACC CTTGGCCGGT GTCGTTAACT TTGAAGCCTG GGCGGATGTC
GCCAATCTCA GTTTGATGTC GGCGCTGGTG CAGTTTTCAC CTTCTTACGT GCAGTGGCCC
GGCCTCGAAA ATCAGCAGCG CTTTGCCGTC GATGGTGGCA GTCTTGTGTG GCAGCGACAT
GGCCGTGGCT GGTTGTTTGG CAGTGACAAG CTTGTGCTCA AGAGTAATGG TACGCTCTGG
CCGGAGACCG GGATGGCCGC CATGTATGAT GGCGTTGAGC TTAAGGCTAA ACTGGATGCG
TTGGATTTGG GTGCCCTGTC GCCCCTGGTC CCCCTTATCC CCGGGCTCAC CATTGACGGT
TTGAAAACCC TGCTTGCCCT GCACCCCCAG GGGCAGTTAC AGGACATGCG CCTGCACCAT
AAGGCTTTGC CTGGCACAGC TGAGCAGGAA AGCGCCCGTC AATTAGCGAT AAGTGCCGGG
TTCAGTGGAC TGGGATGGCA ACAGGTGAGT CATATCCCGG GGCTTAAACA GCTCGACGCA
AGCGTGTTTT TCGATGGCGA ATTACTGCGG GCTTCTTTAC CTGCCCAGAC CCTTGAAGTC
GACTTTGGCA CCCAAGCTTT TAAAGCGCCG CTGGTTTTCC ATACCCCGGG AATAGAGCTT
GGGTATGACC TGAGCGAGAA CGCATTGCTC GCCCCCTCGG TACAGCTCGA GAATCCCGAT
TTGGCAGTGG ATGCCGCCAT GAAAATGGTG TTCAGCCAAC CGACTCATCT GGCGCTCTCC
GCCGGTGTTG AGGTGCGGGA CGCTGCCCGT GCTGGCTACT ACTTCCCCCG AGCGGCCATG
GGCAGCGATT TGGCCGATTA TCTGGAAGGG GCGATTATCG CAGGTCGCAC CCGCGATGCG
GCCGTGGTGT GGAACGGGGC GCTCCAAGAT TTCCCTTATC GGGACAACAG CGGCATTTTT
CAGGCAGGCT TTGTGATGGA CGAGGCCAAT TACGCCTTCC AGCCTGATTG GCCAGCCGTT
ACTGAGTTGT CGCTGCGTGC CCTGTTTGAA AACCTGCGTA TGGATATCTG GGTGGATGAA
GGCAAGCTCA GGGCGGTGAA TGCCGCCGGA GCCCATGTGT ATATTCCCGA AATGAGCCAC
GAAACCGTAT TACACGTGGA GGCGGCGCTT GCCACCACGG GGCCTGCGGC CACAGCAGTA
TTGCAGGCGT CTCCTTTGAA GCACTCAGTG GGCGCCGTGT TGGATGTGGT GAAGGTACAG
GGCGCAGTAA AAGGGGATCT GGACCTGGTT ATTCCCCTCT ATCACGGCGG CAAGCCTGAC
ATCCAGGGGC TGGTGCTCTT TGATGATACC CCTGTCTATC TCGATACCCC GGGGGTGCAG
CTCAACCGCC TCAAGGGTGA ACTCAGGTTT GCCAACGACA GAATTGAGGC CGAGGGGCTA
AGTGCCCGCC TCTTTGGTCA GCCCCTCAGT TTGGATGTGT TTGGCGCAGA TGATGCCAAA
GGCTATAAAG TTGATACCAC ACTCAAGAGC GGCTGGGATC TGGCCTCCTT ACCGCCTTCA
CTGGACAACC CCCTGAGTGA TTTCTACGCC GGTGTGTTGG CCTGGCAGGG CTCTCTGGGG
CTGACACTGC CCAGGGCCGG TGGTTTTAAT ATCGAGGCAG AAGCCGAGTC CAGCTTGCGC
AACGCCGAGC TTAAACTGCC ACCGCCCTTT GCCAAAAGCG TGGGCGTGCC CATGCCACTG
AAGCTCACAC TGCAGGGAAA TGGCGAGGGG TTGGCGTTGG ATGTGTTCCT GGATAACAAG
GGGCACTTTG CCGGACATAT ACTGCCTTCG AGCGGTACCA TGGACAGTTT TCTGCTGACC
TTGGCTGATA GCCTGAACGC TCCGGAAGGG GGCGGTGTGT CCGAAAAAGT CAGCGATTCC
CAACATTCCA CCACTCCCGA CAATCCAGGT GTTTCAGAAG GTGTGGGCGT CAGCACAATC
ACAGCGGCAG ACGCCAATCC AACTCAGGCG AATCCTGAGT CTACTCCGGC AGAGAATGCG
ATACAGGGCT CTGAGCCCAC AGTCCCACAG TCAGCCTCGG TATCGGCGGT GACTTCTCTT
GCACAGAGCT CTCGTTCCGC TGCAGGGGGG CGCCTCGATG TTACCCTGCG CCAGGCGAGT
TTTAATGACT GGCTGCCCAT CATCATCGGA TTTGTGGACT CAAGCACAGC AGTGCCCGCA
TCTGACAATG CCCAGCAAGT CTCTCCAGAA GCGCTGGTCA ATCCTGAACC TCAATCCACG
GGCTTCTTTC CAAAGCTCGA AGGTATCTTT GCCGATATAG GTCAGCTGAC ACTTTTTGGG
CAGTCCCTCG CCGATGCGCA AATCTTTGCC CGTCCGGAAG ATGGCCTGTG GCGCGTCAGC
ACCTATGCCA ACGAGTTCAG TGGTGATATC GATCTCTTCC CCGATTGGCA CCGCGGCGGC
ATTAAACTCA GGGCCAGTAA ATTATATCTG TCTCCCGAGT TCACCGAGGC GGAGGCCGAA
GCCAAGGTGC TGGGAGATGA ACAGTTCAGC AGTAATCTGC CGCCTATCGC GGTGGATGTA
GATGACTTTC GGCTCTACGA CCGTGCCCTG GGGCACCTGG TGTTACAGGG GCAGCCCGAG
CCGGGCCGCT ACAATTTTCA AACCCTGTCA CTCTCATCCG GCGCTGCTAC CTTAAAGGGG
CAGGGTGGCT GGTTGATGGA CGTCAATCAA ACCCGCATGG AGTTCAGTCT CAAGGCGGAT
AAGTTTGATG CCTTGGCGCA GCAGCTGGGC ATTACCCCGG GTATCAAGGA TTCGCCTTTG
GATATCAGCG CCGAGCTCTT CTGGCAGGGG GCGCCCCACG AGTTTGACCT TGGCAGCCTC
AGTGGAGGAC TCAAGTTTGC ACTCGGCAAA GGCAGCCTGA CCGAAATCAG TGACAAGGGC
GCCCGTATTT TCTCTCTCTT CAGCCTGGAT TCGCTGCTGC GCAAGCTGTC GCTGGACTTC
ACGGACGTGT TTGGCAAGGG GATGTTCTAT AACAGTTTTG CCGGCACCCT GGAGCTGGAT
AATGGCGTTG TGAAAACCCG CGACACCGAG ATGGACGCCA TCGCTGGCAA TATGAAGGTA
CGTGGCTTTA CCGACCTGAC CACCCAGAGC CTGAACTACG ACATTCGTTT TGTGCCCCAG
CTGGCCTCCA GTGTGCCAAC TGTGGTGCTG CTCAGTACCA GTGCCTGGAC CATGGGTCTG
GGTGCCTTTG CCCTCACCAA AGTATTGGAA CCCGTGATTG AGGTGATTTC GGAAATTCGT
TTCCGTCTCT CTGGCACCAT GACAGACCCC ATGCTCGAAG AGCTGGAGCG TAAGAGCAAA
GAGATAGAAA TTCCCGAGTC GGTACTGCCA AGGCCAAAAG AGGGTGAGGC ACCAGCATCT
TCGGCAGATG GCGCTGTGTC GGCGGAGCAA GGGGGCGTAG AGCAGGCACA GGCTGCGCAG
TCTGAGCCAG GGCAACAAGC CCCTGAACAG GCAAAGCCTG ACTCTGTGCC TCAATCAGCG
CCCGTAAAAG ATCCAGTGCC GGAGCCAACA GAAGAGCCGG AGTCCCAAAT TCCTGAAACG
CCCTCAGCCG CCGAGCCCGA ACCTTCGTCG CAGTTGCCCG GCGCATCCGA GCCGGTACAA
TTGAGTCATT ATTTACGCCA TGGAGAAAAG CATGCAGGTC AGTTTGCTGC AATGCCAGAG
CAGCCGGGAT GTAGAGGCCA ATCTGGCCTT TATCGAATCG CAGCTTGA
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| Protein sequence | MAAFWRPASL GRICGLTLAT LLVLFALGVS LIRSLLPQLE QARDRVTDYL WENYRIEVKV
SRLAAEWQAF GPSLTVENLI LPPQEGLPLT LIIKRTDIKL DFWQTLMNRE PTVEHVAFEG
VQIALDLDAM GGSGPQESVP VSNDTTRVKE TTRVIDWLSP LLLEQLQQFA LTDATVQLKS
KYHDFRPIYV GDLRWLNLDG RHRAEGYVYL DDRASVSERL SLQIDFKGDG SQPESIHGQL
YLAARALDLG EWAARQPNPF NEAEPLPLAG VVNFEAWADV ANLSLMSALV QFSPSYVQWP
GLENQQRFAV DGGSLVWQRH GRGWLFGSDK LVLKSNGTLW PETGMAAMYD GVELKAKLDA
LDLGALSPLV PLIPGLTIDG LKTLLALHPQ GQLQDMRLHH KALPGTAEQE SARQLAISAG
FSGLGWQQVS HIPGLKQLDA SVFFDGELLR ASLPAQTLEV DFGTQAFKAP LVFHTPGIEL
GYDLSENALL APSVQLENPD LAVDAAMKMV FSQPTHLALS AGVEVRDAAR AGYYFPRAAM
GSDLADYLEG AIIAGRTRDA AVVWNGALQD FPYRDNSGIF QAGFVMDEAN YAFQPDWPAV
TELSLRALFE NLRMDIWVDE GKLRAVNAAG AHVYIPEMSH ETVLHVEAAL ATTGPAATAV
LQASPLKHSV GAVLDVVKVQ GAVKGDLDLV IPLYHGGKPD IQGLVLFDDT PVYLDTPGVQ
LNRLKGELRF ANDRIEAEGL SARLFGQPLS LDVFGADDAK GYKVDTTLKS GWDLASLPPS
LDNPLSDFYA GVLAWQGSLG LTLPRAGGFN IEAEAESSLR NAELKLPPPF AKSVGVPMPL
KLTLQGNGEG LALDVFLDNK GHFAGHILPS SGTMDSFLLT LADSLNAPEG GGVSEKVSDS
QHSTTPDNPG VSEGVGVSTI TAADANPTQA NPESTPAENA IQGSEPTVPQ SASVSAVTSL
AQSSRSAAGG RLDVTLRQAS FNDWLPIIIG FVDSSTAVPA SDNAQQVSPE ALVNPEPQST
GFFPKLEGIF ADIGQLTLFG QSLADAQIFA RPEDGLWRVS TYANEFSGDI DLFPDWHRGG
IKLRASKLYL SPEFTEAEAE AKVLGDEQFS SNLPPIAVDV DDFRLYDRAL GHLVLQGQPE
PGRYNFQTLS LSSGAATLKG QGGWLMDVNQ TRMEFSLKAD KFDALAQQLG ITPGIKDSPL
DISAELFWQG APHEFDLGSL SGGLKFALGK GSLTEISDKG ARIFSLFSLD SLLRKLSLDF
TDVFGKGMFY NSFAGTLELD NGVVKTRDTE MDAIAGNMKV RGFTDLTTQS LNYDIRFVPQ
LASSVPTVVL LSTSAWTMGL GAFALTKVLE PVIEVISEIR FRLSGTMTDP MLEELERKSK
EIEIPESVLP RPKEGEAPAS SADGAVSAEQ GGVEQAQAAQ SEPGQQAPEQ AKPDSVPQSA
PVKDPVPEPT EEPESQIPET PSAAEPEPSS QLPGASEPVQ LSHYLRHGEK HAGQFAAMPE
QPGCRGQSGL YRIAA
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