| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0432 |
|---|
| Symbol | |
|---|
| ID | 4602687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | + |
|---|
| Start bp | 531879 |
|---|
| End bp | 532790 |
|---|
| Gene Length | 912 bp |
|---|
| Protein Length | 303 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639779768 |
|---|
| Product | response regulator receiver protein |
|---|
| Protein accession | YP_926312 |
|---|
| Protein GI | 119773572 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACCCCG TCCATGAAAA TTATTGTGAA TTTGCCGCCG TTGCCGAGGT TGTTCAGTGC
CTTCAGCAAC CCATGGCGTT GGCCGATGCC TCCGGTAAGG TGCTCTGCGT GAATCAAGCC
GCAGCAGCAT TACTGGGGGA CGAAGCAGAG ACCTTTATTG GGGAGCTGTG GCCAAGTTGG
CTGGAGAGTG GATATCAGGG CCTCTACCGG GAACTGCAAT CTGCAGCCGA TGGGCAATAT
CATGCTCTGC AACACGGTGC CAGGGAAGTG CAGCTTCGGC GGGTGGACGG TGCCCTCTTG
TGGGTGAAGC TGAGTCTGTC GTTTGTGCAG GGGCTGCTGC CGCTGTTTCT GGTGGGTTTT
GAGGATTTGT CCTCGCAAAA GGCGGAGGTA CAAAGGCTCA CTGCGCTGGC GGCCACCGAT
TATTTAACCG GCCTTGCCAA TCGACGCACC CTGATGGAGG TGCTGGAAAA ACAGTGGCGA
CAGTGTCTGG CCCGTCGTCA CCCCATTAGT GTGGTGATTG TTGATGTGGA CTTTTTCAAG
CAATTCAACG ATCTCTATGG TCATTTAAAG GGGGATGAGT GTCTCAGACA GATTGCTGCG
GCCTTGGCTT CTACCCTGCC TTCACCCCAA TGCCTGGCTG CGCGATTCGG CGGCGAAGAA
TTTGTCCTGC TGCTCCCTGG CTTTAATGCG GCCATGGCGG AATTGATTGC CAGACAGGTG
TCTGAGGCGG TAGCAGCCAT AGATATTGCT GCCATGGGCT TGCCACAGGG GGCCCTGCTG
ACCGTCAGTC AAGGGATTGC CTGTGAGATA AGTGGCCAGT TTCGCACCGC CGATGCCATG
CTGCTGGGGG CCGATACGGC GCTGTACCGG GCCAAGCGCG AAGGCAGAAA CAAGATAATA
CTGTCGGACT GA
|
|---|
| Protein sequence | MYPVHENYCE FAAVAEVVQC LQQPMALADA SGKVLCVNQA AAALLGDEAE TFIGELWPSW
LESGYQGLYR ELQSAADGQY HALQHGAREV QLRRVDGALL WVKLSLSFVQ GLLPLFLVGF
EDLSSQKAEV QRLTALAATD YLTGLANRRT LMEVLEKQWR QCLARRHPIS VVIVDVDFFK
QFNDLYGHLK GDECLRQIAA ALASTLPSPQ CLAARFGGEE FVLLLPGFNA AMAELIARQV
SEAVAAIDIA AMGLPQGALL TVSQGIACEI SGQFRTADAM LLGADTALYR AKREGRNKII
LSD
|
|---|
| |