| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_0418 |
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| Symbol | |
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| ID | 4602673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella amazonensis SB2B |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008700 |
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| Strand | - |
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| Start bp | 514689 |
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| End bp | 515582 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 639779754 |
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| Product | putative transcriptional regulator, CadC |
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| Protein accession | YP_926298 |
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| Protein GI | 119773558 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000126623 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTATT CACTCTATCC ACTCACATTG GATGTGCAGG GACGCAGCCT GACGTACAAA
GGATGCAAGC TTCAGTGCGA TGAACGCACT CTGATGTTGT TTCAGCTGCT GATTGAATCC
TATCCTGAGC CCTTGGAAAC CAGCGCTTTG CTGGAAAAGC TGTGGCCAAA TACGGTCGTC
AGCAGCTGGT CGGTCACCCG GCTTATCTCC GATGCCCGTA AATTGCTCAA AGATGCCGGC
ATGGAAGAGT CGGTCATTCA AACACTCCAC GGCCGGGGTT ACCGGCTTGA GCCAGAACTG
GCCGCCAAAC TCCAAAGTCA TGTCCAGGAC AGCAACACCG GCGCGGTCCG CGTTCCCAAA
ACCCGTCCTT TGGCCTGGGC GGCATTGGCA GCCTCACTGT TGGTGGCCGC GATTGTGCAG
TATGTGGGCC AATCTCCCCA GGGGTTGTTG ATAGGTGAGC CTGCCAATGT CAAAGGTCGC
ATTCTTTGGG TGGACGATCA TCCCGAAAAC AACACTGCCG AAATAGCCAG ACTCAGGGAT
GCCAATATCG CTGTCTATAC CACGCTGAGT ACTGAAGAAG CTCTGATGTT ACTGTCCATG
TATCGCTACG ATGCGGTGAT TTCAGATATG GGGCGCTCTG ATGATTCCCT GGCCGGACTG
AAACTGGTGG AAAGCCTCAG ACAAAGCGGT GACCAAACGC CGTTTTTTCT GTACACCATA
TTACCGTCCG ATGCCCAGCG ACAATTGGTG CTGGAACATG GCGCACAGGG CGTGGCCGTG
GATGAAACGG CCCTGTTTGC CCTGCTTGAA CGGGTCAACT GGGGCATAAA ATCGACAGCG
CCCCGTGAAG ACGAACGGAA TACCCCGCTC ACAAAAACCG ACACAAGCAA TTGA
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| Protein sequence | MIYSLYPLTL DVQGRSLTYK GCKLQCDERT LMLFQLLIES YPEPLETSAL LEKLWPNTVV
SSWSVTRLIS DARKLLKDAG MEESVIQTLH GRGYRLEPEL AAKLQSHVQD SNTGAVRVPK
TRPLAWAALA ASLLVAAIVQ YVGQSPQGLL IGEPANVKGR ILWVDDHPEN NTAEIARLRD
ANIAVYTTLS TEEALMLLSM YRYDAVISDM GRSDDSLAGL KLVESLRQSG DQTPFFLYTI
LPSDAQRQLV LEHGAQGVAV DETALFALLE RVNWGIKSTA PREDERNTPL TKTDTSN
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